Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_E12
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U34360-1|AAA98763.1| 1227|Homo sapiens LAF-4 protein.                  31   2.7  
BC036895-1|AAH36895.1|  608|Homo sapiens AFF3 protein protein.         30   8.3  
BC029414-1|AAH29414.1|  414|Homo sapiens PRPF40A protein protein.      30   8.3  
BC011788-1|AAH11788.1|  411|Homo sapiens PRPF40A protein protein.      30   8.3  
AK092327-1|BAC03864.1|  781|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AK024810-1|BAB15016.1|  323|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AF049528-1|AAC27506.1|  452|Homo sapiens huntingtin-interacting ...    30   8.3  
AF049523-1|AAC27501.1|  423|Homo sapiens huntingtin-interacting ...    30   8.3  

>U34360-1|AAA98763.1| 1227|Homo sapiens LAF-4 protein.
          Length = 1227

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +3

Query: 195 PTFHSGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRR 374
           P   +   ++KG  S  S  T + +S     +   SSG D+       +SE +K  H   
Sbjct: 401 PNCRTSVPSSKGSSSSSSSGTSSSSS-----DSESSSGSDSETESSSSESEGSKPPHFSS 455

Query: 375 PTKIPLNFRTWE 410
           P   P +   W+
Sbjct: 456 PEAEPASSNKWQ 467


>BC036895-1|AAH36895.1|  608|Homo sapiens AFF3 protein protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +3

Query: 195 PTFHSGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRR 374
           P   +   ++KG  S  S  + + +S     +   SSG D+       +SE +K  H   
Sbjct: 401 PNCRTSVPSSKGSSSSSSSGSSSSSS-----DSESSSGSDSETESSSSESEGSKPPHFSS 455

Query: 375 PTKIPLNFRTWE 410
           P   P +   W+
Sbjct: 456 PEAEPASSNKWQ 467


>BC029414-1|AAH29414.1|  414|Homo sapiens PRPF40A protein protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 240 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKIPLNFRTWE 410
           +++Q T   A    + EVS ++GE+TS  E   D    K E   +P K    + T E
Sbjct: 296 EQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKE 352


>BC011788-1|AAH11788.1|  411|Homo sapiens PRPF40A protein protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 240 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKIPLNFRTWE 410
           +++Q T   A    + EVS ++GE+TS  E   D    K E   +P K    + T E
Sbjct: 296 EQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKE 352


>AK092327-1|BAC03864.1|  781|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35008 fis, clone OCBBF2012191, highly similar to
           LAF-4 PROTEIN. ).
          Length = 781

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +3

Query: 195 PTFHSGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRR 374
           P   +   ++KG  S  S  + + +S     +   SSG D+       +SE +K  H   
Sbjct: 426 PNCRTSVPSSKGSSSSSSSGSSSSSS-----DSESSSGSDSETESSSSESEGSKPPHFSS 480

Query: 375 PTKIPLNFRTWE 410
           P   P +   W+
Sbjct: 481 PEAEPASSNKWQ 492


>AK024810-1|BAB15016.1|  323|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21157 fis, clone CAS09937. ).
          Length = 323

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 240 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKIPLNFRTWE 410
           +++Q T   A    + EVS ++GE+TS  E   D    K E   +P K    + T E
Sbjct: 207 EQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKE 263


>AF049528-1|AAC27506.1|  452|Homo sapiens huntingtin-interacting
           protein HYPA/FBP11 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 240 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKIPLNFRTWE 410
           +++Q T   A    + EVS ++GE+TS  E   D    K E   +P K    + T E
Sbjct: 342 EQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKE 398


>AF049523-1|AAC27501.1|  423|Homo sapiens huntingtin-interacting
           protein HYPA/FBP11 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 240 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKIPLNFRTWE 410
           +++Q T   A    + EVS ++GE+TS  E   D    K E   +P K    + T E
Sbjct: 313 EQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKE 369


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,915,812
Number of Sequences: 237096
Number of extensions: 1498402
Number of successful extensions: 3152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3143
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)