Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_D21
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   1.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   2.7  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   3.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.8  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    24   6.3  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    24   8.3  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   8.3  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 96  AKIMPEKAI*RPEYLTFAFLAITCAEWIS 182
           AKI+P K +  P+Y TF    +  AE+++
Sbjct: 200 AKILPPKYVNSPDYTTFPSSFVGTAEYVA 228


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +2

Query: 74   PQCVF-----KSCKNNARKSNLTAGVSYFRFPSNH 163
            P+CV      +SC +  R   LTA  +  R+PS+H
Sbjct: 1961 PECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSH 1995


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 18  QWTAIG*NDDSQCQPVSQYRNVYS 89
           QW  IG    S+C+ ++  +N+YS
Sbjct: 69  QWHFIGSLQSSKCKKIASVKNLYS 92


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 53  MSTRLTIP-QCVF-KSCKNNARKSNLTAGVSYFRFPSNHVCRMDL 181
           M + L +P +C+  KS +NN RK  +     YF   SN +   +L
Sbjct: 410 MYSTLHVPKECLLSKSYRNNVRKEVILLMTEYFAIFSNSIAFPEL 454


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 199 QEMTFISQLRSPLIDTGHLCLP 264
           Q +T ISQLRS L+ T  L  P
Sbjct: 216 QVLTMISQLRSRLLTTSRLLGP 237


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 190 PEKQEMTFISQLRSPLIDTGHLCLPCSRLLKRGQNI 297
           P KQE  F+ + +   I+T        +L KRG NI
Sbjct: 56  PAKQEELFVVEDQGDKIETEETGTCAQQLKKRGWNI 91


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 262 PCSRLLKRGQNIVIKIP 312
           PC R LK+G   VI+ P
Sbjct: 132 PCGRCLKKGLECVIETP 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,769
Number of Sequences: 5004
Number of extensions: 24276
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)