Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_D13
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    24   4.3  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   9.9  

>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 162 VLRHDKDLSLTNKYKNXDSAYGN 230
           ++RHDKD+ + N Y+      GN
Sbjct: 235 LMRHDKDIIVPNVYRPLPDWLGN 257


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 139 YFKTEII*NISTKTSLLCFLFNVIRKT 59
           YF+  +  NI+ ++ +L  L NV+ KT
Sbjct: 240 YFEKVLGENIAAESLMLALLSNVVHKT 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,736
Number of Sequences: 5004
Number of extensions: 16712
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)