Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_D13
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66...    26   6.5  
01_06_0350 - 28615760-28615780,28615859-28616047                       26   6.5  
01_06_0044 - 25922298-25923434                                         26   6.5  

>11_01_0088 -
           662984-663024,663743-663774,664079-664503,665048-666006,
           666661-666846,666942-667044,667141-667323,667514-667606,
           668092-668274,669011-669031
          Length = 741

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 91  LCFLFNVIRKTIFYYLFKRAAILM 20
           LCFL  V +K   Y+LFKR+ +L+
Sbjct: 94  LCFLEKVDQKFEKYHLFKRSIMLI 117


>01_06_0350 - 28615760-28615780,28615859-28616047
          Length = 69

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 150 C*LKVLRHDKDLSLTNKYKNXDSAYGNCDFY 242
           C  + L HD+  S   K+KN  S+ GN   Y
Sbjct: 15  CVNQELHHDEHFSFIYKWKNKISSAGNARLY 45


>01_06_0044 - 25922298-25923434
          Length = 378

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 264 EPNRSTHXRNHSCRTPSHXFCIYLSVRGLCHDATLSVNINTVIL 133
           EP  S      SC++  H  C+ LS      D T +  + +V++
Sbjct: 270 EPKASLVNLPESCKSGMHNMCLALSPAAAADDGTSNAALLSVVV 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,913,573
Number of Sequences: 37544
Number of extensions: 80375
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)