Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_D09
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.9  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    24   6.5  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.6  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  KQSEPAKKKTVVPEDKFDSD 82
           K  +P K K ++P+ +FD D
Sbjct: 52  KNKKPLKPKIIIPDKEFDLD 71


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 20  SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYGL 130
           +K S+PA +  V+P   F S  S  P+ EG+  +  L
Sbjct: 284 TKNSKPAGQ--VIPSSPFTSTLSRFPSLEGAVSEISL 318


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 8   KQRISKQSEPAKKKTVVPEDKFDSDESNA 94
           ++R++ Q  P   +  +P DKF SD+S A
Sbjct: 167 EERLTDQGRPVAFE--LPPDKFHSDQSKA 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,913
Number of Sequences: 5004
Number of extensions: 13418
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)