Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_D06
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical ...    35   0.058
AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      28   6.7  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    28   6.7  
Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    27   8.8  

>AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical
           protein C53H9.2a protein.
          Length = 554

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 447 LSFPRRPP---WDFNMTAAQLDAQEHRYFKNYIDXLQASEHWKDISYFEMNLETWRQLWR 617
           L  PRRP    W+      +L+ +    +++ +  LQ  +    ++ FE N + WR+LWR
Sbjct: 118 LRIPRRPAKELWENMEDLTKLENEAFLQWRSDLSELQEVDGLV-LTPFERNPDMWRELWR 176

Query: 618 VLXMCDIL 641
           V+   DI+
Sbjct: 177 VVEKSDII 184


>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 336 RETEDELKIKKEDALRALSPVPEKEMEINSLDYFPVDLSFPRRPP 470
           RE + EL++KKE+  R  SP P +         F   +S  +  P
Sbjct: 398 RELKFELQLKKEEKTRMQSPTPTRTPRTQKRAMFRTPMSTAKMEP 442


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 336 RETEDELKIKKEDALRALSPVPEKEMEINSLDYFPVDLSFPRRPP 470
           RE + EL++KKE+  R  SP P +         F   +S  +  P
Sbjct: 398 RELKFELQLKKEEKTRMQSPTPTRTPRTQKRAMFRTPMSTAKMEP 442


>Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical
           protein T04F3.2 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 118 LSLTVTRHAPSTSEDPXSAGRPK----NNSCSLRSRTRF 222
           L  + TR  P   E P +   PK    NN C  + RTRF
Sbjct: 108 LGSSTTRGKPKCEETPTTTVAPKRVRRNNRCKEKKRTRF 146


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 375 ALRALSPVPEKEME-INSLDYFPVDLSFPRRPPWDFNMTAAQLDAQEHR 518
           A R  SP P +EM+ +       V    PRR   DF +   ++D  +HR
Sbjct: 774 APRMRSPTPAREMKPVRLASVVIVKKQLPRRHWLDFQVDLKRIDFDKHR 822


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,925
Number of Sequences: 27780
Number of extensions: 255249
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)