Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_D01
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 104 1e-23
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 53 4e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 49 5e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 49 7e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 2e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 39 5e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 7e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 38 0.002
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.009
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.015
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.015
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.015
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 34 0.015
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.020
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.027
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.036
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 33 0.036
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.036
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.083
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.14
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.25
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 30 0.25
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.33
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.44
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.0
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 28 1.3
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 1.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 3.1
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 5.4
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 9.5
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 104 bits (250), Expect = 1e-23
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Frame = +1
Query: 262 SSADHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 441
S D+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+
Sbjct: 178 SLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKR 236
Query: 442 AKARH-----GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFE 606
A R K+FVGG+ + +++E RNFF++FG +L + D +GF F+T+E
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Query: 607 SEQVVNDLLKTP 642
+E V + P
Sbjct: 297 NESAVEATMSQP 308
Score = 58.4 bits (135), Expect = 8e-10
Identities = 23/59 (38%), Positives = 41/59 (69%)
Frame = +1
Query: 457 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLL 633
GK+F+GGL+ E +DD +R++F +FG +L + D T +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 444
F +G + + D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 168 DSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELR 269
+S + N+ E +P +D K+F+GGL+WETTD LR
Sbjct: 146 ESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLR 180
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 52.8 bits (121), Expect = 4e-08
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 432
F + G + SI V D T RS G+A++ F E +K + +T+ + D
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 433 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESE 612
P K G +F+ L I + + + FS FG IL ++ D N KG+ F+ F+S
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSV 218
Query: 613 QVVN 624
+ N
Sbjct: 219 ESAN 222
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 393
F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 384 FSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 49.2 bits (112), Expect = 5e-07
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 23/132 (17%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD-----PK 438
F YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V+ P+
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Query: 439 KA------KARHGK-----------IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXT 567
A + R G +FVG LS ++D++ F G I + +P D
Sbjct: 343 PANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQ 402
Query: 568 XNXRKGFCFITF 603
KGF ++TF
Sbjct: 403 SGRLKGFGYVTF 414
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 414
FG G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQ 615
+FVG LS + D + F E+GTI+ + D KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +1
Query: 403 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRK 582
E TI K + K + + G ++VG L + ++R +FS+FG +L + M + K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 583 GFCFITFESEQVVNDLLKT 639
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 382 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 552
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 553 PFDXTXNXRKGFCFITFES 609
+ +GF F++F +
Sbjct: 133 MREPVTKASRGFGFLSFST 151
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 196 PQDAMTTENFLLV-G*AGRPQIRSSADHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 372
P+ + N L V G A R Q F +G + + + +P T SRGF F+ F
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 373 E 375
E
Sbjct: 153 E 153
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 460 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
++F+ L+ ++D++++ F FG + V MP D N KGF +I F
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +1
Query: 373 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 552
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 553 PFDXTXNXRK----GFCFITFESEQVVNDLLKT 639
PF + G F+TF +++ V+ ++T
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIET 108
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 168 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELR*SFWSI 287
D+ H SAE P + DD ++FVG LS T E+R F ++
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETV 67
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQ 615
I++G L ++++D+I FSEFG + + + D KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 378
F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 376 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 549
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 550 MPFDXTXNXRKGFCFITFESEQVVNDLLKTPKRT 651
M D GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 433 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 555
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 286 YGEIESINVKTDPNTGRSRGFAFIVF 363
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 274 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 405
+FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 289 YFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLL 633
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +1
Query: 403 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 561
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 562 XTXNXRKGFCFITF 603
T +KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 274 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKA 444
HF G++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ +
Sbjct: 111 HFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELT 169
Query: 445 KARHGK 462
GK
Sbjct: 170 AGGGGK 175
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 271 DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 411
+HFG G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 246 EHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVE-MPFDXTXNXRKGFCFITF 603
+FVG L E +D +++ F + G I V M F+ T KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKC-KGFGFVDF 276
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 186 SAEAPGRDDDRKLFVGGLSWETTDKELR*SFWSI 287
S ++ ++ LFVG L +ETTD +L+ F +
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQV 251
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLLKT 639
+FVGGL+S +S+ +++ F FG IL +++PF KG F+ + + + T
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG------KGCGFVQYSEKSAAEKAINT 351
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 274 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 441
HF + G + + + D TG +GFA+I F P + + ++ + KV PK+
Sbjct: 74 HFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLL 633
++VG + ++ +E+++ F+ G++ V + D KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 454 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF-ESEQ 615
H ++FVG L ++++D+ + FSE+ +++ ++ D R GF F++F +S+Q
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTR-GFGFVSFKDSDQ 82
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.009
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Frame = +1
Query: 241 AGRPQIRSSADHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-AGEHTIN 417
A R R D F G + + D +GRS+G A++ F +S+ +A +G+ +
Sbjct: 248 ANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLG 307
Query: 418 NKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIRNFFSEFGTIL 540
+ K KAR ++ V + ++D++++ F FG I
Sbjct: 308 LPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIE 367
Query: 541 XVEMPFDXTXNXRKGFCFITFES 609
V + D N KGF +I + +
Sbjct: 368 FVHLQRD-DQNRSKGFGYIQYRN 389
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVV 621
+FV L++ ++ E+ +FF + G + ++ D KG ++ F E V
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 460 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFES 609
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 286 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 423
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.015
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 415 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCF 594
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 595 ITFESEQ 615
FE E+
Sbjct: 342 ACFEEEK 348
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 460 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXT-XNXRKGFCFITFESEQ 615
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 436 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
K+ + + V LS + ++E+R+ F FG I V + D KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 271 DHFGAYGEIESINVKTDPNTGRSRGFAFIVF 363
D F +G I+ + + D TGR++GFAF+ +
Sbjct: 220 DLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 366
F YG IE I V + TG+S G+AF+VF+
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 412 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 537
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 271 DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 441
D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 402 DLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
+FV L+ + D++ NFFS+ G I + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 32.7 bits (71), Expect = 0.047
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 429
F G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 376 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 549
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 550 MPFDXTXNXRKGFCFITFESEQVVNDLLK 636
+ D + G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 271 DHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 366
+HF +G + + DP T RS G FI F+
Sbjct: 295 NHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 33.1 bits (72), Expect = 0.036
Identities = 11/55 (20%), Positives = 28/55 (50%)
Frame = +1
Query: 460 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVN 624
++FV +S ++ +++R F FG + +++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
Score = 31.9 bits (69), Expect = 0.083
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 274 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 381
HF ++GE+ +++K +P TG S G I F SI
Sbjct: 113 HFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.036
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 YGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 453
+GE + SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.083
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 387
F +G+I S V D TG S +AFI F ES++K
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVV 621
+FV L+ D+++ FS FG I+ ++ D + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 436 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
+ AK+ G I V G+ E +++++ + F++FG + + + D KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
I V L+ ++ + I F +G I + MP KG+C+I +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
+FVG + ++S+ ++ F++ G + ++ D KG+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 493 SDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLLKTPK 645
+++ IR+FFS+FG + VE+ N C + F S + N+ +P+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 277 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDPKKAKAR 453
F +G I+S + + P+T S+G+ F+ F P E++ + K++ A+ R
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Query: 454 HGK 462
+
Sbjct: 501 EDR 503
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 463 IFVGGLSSEI--SDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFIT----FESEQVVN 624
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 625 DL 630
L
Sbjct: 481 TL 482
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 427 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 537
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/47 (19%), Positives = 25/47 (53%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITF 603
++VG + E++++++ + F + G + ++ D KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 289 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 468
GE+E V +P + ++F K+ A +++ +++DP K A +
Sbjct: 351 GEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVSALQQMLI 410
Query: 469 VGGLS 483
GG++
Sbjct: 411 AGGVN 415
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 340 RGFAFIVFKAPESIDKVMAAGEHTINNKK 426
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 481 SSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFES 609
+ +++D +R+ +S FGT+ V + D + + + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Frame = +1
Query: 289 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV-MAAGEHTINNKKVDPKKAKARHG-- 459
G + +I++ D GF F F + ++ + + K + +A G
Sbjct: 35 GPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVN 94
Query: 460 -----KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFES 609
+FVG L + + + + FS G ++ KG+ F++++S
Sbjct: 95 TLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTI 537
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 229 TKSFLSSSRPGASALL*SCESPPPFXAFPLSWLSVVIS 116
T SFL + R +L C S P AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLLKTP 642
++V L I+ E+R++F FG IL ++ + R F F +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV---NNNSGRIVFAQRYF-AEQAINEMNNFP 233
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 447 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 286
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -1
Query: 327 VWICLYINTLYFTVCSKMISGAPYLWSPSSAHQQKVF 217
VW C+ + F + S YLW + HQ ++F
Sbjct: 2199 VWFCISVFLQNFWLSSLNGRSWSYLWDIGNIHQWQIF 2235
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 463 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 552
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 483 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 304
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 303 TL 298
TL
Sbjct: 1251 TL 1252
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 259 RSSADHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 390
R+ D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 294 RNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 469 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDXTXNXRKGFCFITFESEQVVNDLLKTPKR 648
V L ++ + ++ + F F I + M +D +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDRAGRS-EGSCDVYFETSQDAEDAQKTLQS 146
Query: 649 T 651
T
Sbjct: 147 T 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,875
Number of Sequences: 5004
Number of extensions: 47335
Number of successful extensions: 197
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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