Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C20
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    31   0.70 
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    31   0.70 
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       31   0.70 
U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical p...    30   1.2  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    30   1.2  
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    28   6.5  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 247 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 426
           +++ +V++    P+FKF +    ISED      + PS+AK    +   L  ++      Y
Sbjct: 114 DLVKNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVAKNIRLEKHHLKQILKSANVFY 173

Query: 427 KSHQIR 444
           K+  IR
Sbjct: 174 KNDVIR 179


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 247 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 426
           +++ +V++    P+FKF +    ISED      + PS+AK    +   L  ++      Y
Sbjct: 114 DLVKNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVAKNIRLEKHHLKQILKSANVFY 173

Query: 427 KSHQIR 444
           K+  IR
Sbjct: 174 KNDVIR 179


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 247 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 426
           +++ +V++    P+FKF +    ISED      + PS+AK    +   L  ++      Y
Sbjct: 114 DLVKNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVAKNIRLEKHHLKQILKSANVFY 173

Query: 427 KSHQIR 444
           K+  IR
Sbjct: 174 KNDVIR 179


>U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical
           protein F19F10.11b protein.
          Length = 868

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -1

Query: 630 RDSLQCHHYKALISSNV----NIKFYQKFNDMCSNPNXYVTFRDE*ITK*CTVFKISP*R 463
           RDS+  H YK L  +N+     I  ++  ND+ S  N Y+ F+    +  C +  + P  
Sbjct: 348 RDSMSIHKYKNLSVTNILASNRIIAHRLENDVHSTVNFYICFQHHITSFVCALLDMEP-- 405

Query: 462 IILTQFSNLMTFVQ 421
              ++  NL  FV+
Sbjct: 406 -FSSRLQNLREFVR 418


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -1

Query: 630 RDSLQCHHYKALISSNV----NIKFYQKFNDMCSNPNXYVTFRDE*ITK*CTVFKISP*R 463
           RDS+  H YK L  +N+     I  ++  ND+ S  N Y+ F+    +  C +  + P  
Sbjct: 348 RDSMSIHKYKNLSVTNILASNRIIAHRLENDVHSTVNFYICFQHHITSFVCALLDMEP-- 405

Query: 462 IILTQFSNLMTFVQ 421
              ++  NL  FV+
Sbjct: 406 -FSSRLQNLREFVR 418


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 284 GANHGIDTSNNISHFNFLEQ*GNSRRNWHSSPSGKQDILSTS 159
           G NH   T+NN ++     +    +R+  SSP+G + ++STS
Sbjct: 118 GKNHASPTTNNNNNTEEKYEDSQGQRSSPSSPTGSETVVSTS 159


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 397 NVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSLI 513
           N+ +E+V  Y+SHQ       D   + F+Y A+  ++++
Sbjct: 104 NIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVV 142


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 187 DGEECQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESFLISEDENFL 339
           D EEC F    P    KL   +  D+  PW+AP+  F + + L      FL
Sbjct: 527 DNEECTF----PSYMCKLSMNLHSDLYPPWYAPNDVFTNFAILFCLSLTFL 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,777
Number of Sequences: 27780
Number of extensions: 295165
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)