Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_C11
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 113 3e-26
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 85 8e-18
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 71 1e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 65 7e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 65 7e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 65 1e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 64 1e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 63 3e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 62 9e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 61 2e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 61 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 2e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 57 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 6e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 6e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 54 2e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 54 2e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 2e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 49 7e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 5e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 46 6e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 1e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.036
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.44
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.44
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 27 2.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 7.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 7.2
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.5
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 113 bits (271), Expect = 3e-26
Identities = 54/90 (60%), Positives = 67/90 (74%)
Frame = +3
Query: 225 MTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFA 404
M+E+ K F+ LG+ PWLI L L I PT IQ+G I+++L G +CIG AKTGSGKT A
Sbjct: 1 MSEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAA 60
Query: 405 FALPIIQHLAEDPYGIFALVLTPTHELAYQ 494
FALPII+ ++DP GIFAL+LTPT ELA Q
Sbjct: 61 FALPIIEKWSKDPSGIFALILTPTRELAIQ 90
Score = 52.4 bits (120), Expect = 5e-08
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +2
Query: 494 GQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHI 619
G L L+ ++ GG D I +S+ L+KRPH+VVA PGRLAD I
Sbjct: 99 GANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLI 140
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 85.0 bits (201), Expect = 8e-18
Identities = 46/84 (54%), Positives = 54/84 (64%)
Frame = +3
Query: 243 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPII 422
K F LGV L + LG +TPTPIQ+ I +L D IG A+TGSGKT AFALP+I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 423 QHLAEDPYGIFALVLTPTHELAYQ 494
Q L +P FA+VL PT ELAYQ
Sbjct: 106 QELWNNPSPFFAVVLAPTRELAYQ 129
Score = 53.2 bits (122), Expect = 3e-08
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +2
Query: 494 GQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKI 652
G + +R ++ GG D + +++ L+K+PH++V PGRL DH+ FSLK +
Sbjct: 138 GGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNL 190
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 70.9 bits (166), Expect = 1e-13
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Frame = +3
Query: 222 KMTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTF 401
K F +G+ L++ + G + PTPIQ+ I LL G D +G A+TGSGKT
Sbjct: 62 KKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTA 121
Query: 402 AFALPIIQHLAED--PYGIFALVLTPTHELAYQ 494
AF +P+I+HL AL+L+P ELA Q
Sbjct: 122 AFVIPMIEHLKSTLANSNTRALILSPNRELALQ 154
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 509 LRVCIVTGGSDQIEESLKLAKRPHIVVAMPGR 604
LR + GG E+ L+ +P IVVA PGR
Sbjct: 168 LRSVAIVGGVSLEEQFSLLSGKPDIVVATPGR 199
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 65.3 bits (152), Expect = 7e-12
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +3
Query: 261 GVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHLAED 440
G+ I + +LG PT IQ I + +G D IG AKTGSGKT AF LP+ +H+ +
Sbjct: 424 GLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQ 483
Query: 441 -PY----GIFALVLTPTHELAYQ 494
P G A+++TPT ELA Q
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQ 506
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 503 LKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHIS 622
L +R C GG+ ++ L + IVV PGR+ D +S
Sbjct: 518 LNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLS 557
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 65.3 bits (152), Expect = 7e-12
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Frame = +3
Query: 309 TPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHLAEDPY----GIFALVLTPT 476
T T IQK CI L G D +GAAKTGSGKT AF +P+I++L + G+ ALV++PT
Sbjct: 61 TLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 477 HELAYQ 494
ELA Q
Sbjct: 121 RELAIQ 126
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 521 IVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTF 637
++ GG++ EE +L+ R +I+V PGRL HI F
Sbjct: 144 LIIGGNNYKEEKERLS-RMNILVCTPGRLLQHIDQAVNF 181
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.9 bits (151), Expect = 1e-11
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +3
Query: 234 NDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFAL 413
+D ++F+ L + + K + +G T T IQK I LLAG D +GAAKTGSGKT AF +
Sbjct: 86 SDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLI 145
Query: 414 PIIQHLAEDPY----GIFALVLTPTHELAYQ 494
P I+ L + G ++++PT ELA Q
Sbjct: 146 PTIEMLYALKFKPRNGTGVIIISPTRELALQ 176
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 521 IVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKI 652
IV GG+++ E+ KL K +++VA PGRL DH+ F + +
Sbjct: 194 IVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNL 237
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.5 bits (150), Expect = 1e-11
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +3
Query: 249 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQH 428
F G +++K++ LG PTPIQ+ ++G D +G + TGSGKT ++ LP I H
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 429 LAEDPY-----GIFALVLTPTHELAYQ 494
+ P G LVL PT ELA Q
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQ 210
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 63.3 bits (147), Expect = 3e-11
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +3
Query: 237 DGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALP 416
D +A + P ++ L G P PIQ I G D IG A TGSGKT AF +P
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 417 IIQHLAE--DPYGIFALVLTPTHELAYQ 494
I++H D + ALV+ PT ELA+Q
Sbjct: 180 ILEHCLRNVDAKYVQALVVAPTRELAHQ 207
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 LRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCD-TFSLKKI 652
+RV +TGG ++ L K PH+VVA PGRL I+ + T + KKI
Sbjct: 221 IRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKI 269
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 61.7 bits (143), Expect = 9e-11
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +3
Query: 276 LIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGI- 452
++K L LG PT IQ I L G D +GAA TGSGKT AF +PI++ L P +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 453 --FALVLTPTHELAYQ 494
L+L PT ELA Q
Sbjct: 330 TTRVLILCPTRELAMQ 345
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 509 LRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKI 652
+ VC+ GG + +L KRP IV+A PGR DH+ F+++ I
Sbjct: 359 IMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENI 406
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Frame = +3
Query: 231 ENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFA 410
E+ K F+ + P L + + PT +Q I L G D + A+TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 411 LPIIQ------HLAEDPYGIFALVLTPTHELAYQ 494
+PI++ + E+ GIFAL+L PT ELA Q
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQ 103
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 521 IVTGGSDQIEESLKLAKRPHIVVAMPGRLADHIS 622
+ T SD ++ L L P IV+A P R H++
Sbjct: 124 VATNSSDTVQRPL-LLDLPDIVIATPSRCVVHVA 156
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +3
Query: 225 MTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFA 404
+T+ G EF +K L+ + G P+PIQ+ I L+G D + AK G+GKT A
Sbjct: 38 VTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAA 97
Query: 405 FALPIIQHLAEDPYGIFALVLTPTHELAYQ 494
F +P ++ + I L+L PT ELA Q
Sbjct: 98 FVIPSLEKVDTKKSKIQTLILVPTRELALQ 127
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 494 GQPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLAD 613
G+ + ++V + TGG+ ++ ++L HIVV PGR+ D
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 57.2 bits (132), Expect = 2e-09
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Frame = +3
Query: 261 GVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHLAED 440
G+ ++K L + + P+ IQ+ I LL D IG A+TGSGKT AF +P+I +++
Sbjct: 255 GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKL 314
Query: 441 P--------YGIFALVLTPTHELAYQDNP*NSEFA 521
P G +A+VL PT ELA Q ++FA
Sbjct: 315 PPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFA 349
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 497 QPLKLRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLAD 613
+PL R V GG E+S ++++ HIVVA PGRL D
Sbjct: 350 EPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLD 388
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.2 bits (132), Expect = 2e-09
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Frame = +3
Query: 306 RTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQH---LAEDPYGIFALVLTPT 476
+ PTPIQ LLAG D +G A+TGSGKT AF +P +Q+ L+++ LV++PT
Sbjct: 186 KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPT 245
Query: 477 HELAYQ 494
ELA Q
Sbjct: 246 RELAIQ 251
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 249 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQH 428
F + + WL + G + TP+Q I L D + A TGSGKT A+ LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 429 LAE---DPYGIFALVLTPTHELAYQ 494
+ D G+ AL++ PT ELA Q
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQ 87
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.6 bits (128), Expect = 6e-09
Identities = 29/87 (33%), Positives = 47/87 (54%)
Frame = +3
Query: 234 NDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFAL 413
N F + +K L++ + G TP+ +Q I ++ G D I A++G+GKT F++
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
Query: 414 PIIQHLAEDPYGIFALVLTPTHELAYQ 494
I+Q + AL+L+PT ELA Q
Sbjct: 78 GILQSIDLSVRDTQALILSPTRELAVQ 104
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +3
Query: 249 FAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQH 428
F + +KP L++ + G P+ IQ+ I +L D + A++G+GKT F++ ++Q
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 429 LAEDPYGIFALVLTPTHELAYQ 494
+ AL+L PT ELA Q
Sbjct: 81 IDTSLKQCQALILAPTRELAQQ 102
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +3
Query: 264 VKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHLAEDP 443
+KP L++ + G P+ +Q+ CI + + G D + AK+G GKT F L +Q +
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 444 YGIFALVLTPTHELAYQ 494
+ LVL T ELA+Q
Sbjct: 118 GEVSVLVLCHTRELAFQ 134
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 509 LRVCIVTGGSD--QIEESLK-LAKRPHIVVAMPGRL 607
+R + GG + Q E+ K +K PHIVVA PGRL
Sbjct: 149 VRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.6 bits (123), Expect = 2e-08
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Frame = +3
Query: 297 LGIRTPTPIQKGCISRLLAGDD--CIGAAKTGSGKTFAFALPIIQHLAEDP-------YG 449
+ I PT IQ C+ LL DD A+TGSGKT A+ LPI+Q L P G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 450 IFALVLTPTHELAYQ 494
I+A+++ PT EL Q
Sbjct: 217 IYAVIMAPTRELCQQ 231
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 518 CIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHISGCDTFSLKKI 652
C V GG + E ++ K +I++ PGRLADH+ + + ++
Sbjct: 251 CNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQV 295
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.8 bits (111), Expect = 7e-07
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 243 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGD--DCIGAAKTGSGKTFAFALP 416
K F L +KP L+K + ++ + P+ IQ+ + LL+ + IG +++G+GKT AFAL
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 417 IIQHLAEDPYGIFALVLTPTHELAYQ 494
++ + A+ L P+ ELA Q
Sbjct: 174 MLSRVDASVPKPQAICLAPSRELARQ 199
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.0 bits (104), Expect = 5e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 276 LIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHL-AEDPYGI 452
L + L I T IQ+ I + + D + A TGSGKT A+ PI+Q L P G
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 453 FALVLTPTHELAYQ 494
A+++ PT EL Q
Sbjct: 117 RAIIVAPTRELCEQ 130
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 246 EFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPII 422
EF + L++ + G PTP+QK I + +G D + A+TGSGKT F PI+
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 509 LRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHI 619
+R C V GG+D + ++ + ++ A PGRL D I
Sbjct: 284 VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLI 320
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 41.1 bits (92), Expect = 1e-04
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +3
Query: 219 VKMTENDGKEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLL-----------AGDDC 365
+ + N EF+ L + L+++L I +Q + LL GD C
Sbjct: 118 ITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVC 177
Query: 366 IGAAKTGSGKTFAFALPIIQHLAEDPY-GIFALVLTPTHELAYQ 494
+ AA TGSGKT ++ +PI+Q L+ + +V+ PT EL Q
Sbjct: 178 VSAA-TGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQ 220
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 509 LRVCIVTGGSDQIEESLKLAK-----RPHIVVAMPGRLADHISGCDTFSLKKI 652
L+VC TG E+ +L R ++V+ PGRL DHI ++FSL+ +
Sbjct: 234 LQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHL 286
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = +3
Query: 300 GIRTPTPIQKGCISRLLAGDD-CIGAAKTGSGKTFAFALPIIQHLAE-----DPYGIFAL 461
G TP+Q+ ++ + ++ + AKTG+GKT AF L + + + + I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 462 VLTPTHELAYQ 494
+L+PT ELA Q
Sbjct: 117 ILSPTRELALQ 127
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 509 LRVCIVTGGSDQIEESLKLAK-RPHIVVAMPGRLADHI 619
+RV GG+ ++ E + + ++++A PGRL DH+
Sbjct: 141 IRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHL 178
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.036
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 324 QKGCISRLLAGDDCIGAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHELA 488
Q I+ L G I + T SGK+ + +PI+Q L ED A + PT LA
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQST-AFFVFPTKSLA 369
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.44
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -2
Query: 385 PVLAAPMQSSPANNRDIQPF--WIGVGVLIPNV-SNCLISHGFTPNTANSFPS 236
P + +PM+ SPAN + + P+ +G G + SN S GF P T S PS
Sbjct: 221 PSIPSPMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSAGFRPPTFFSSPS 273
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 357 DDCIGAAKTGSGKTFAFALPIIQHLAEDPYGIFALVLTPTHEL 485
D A GSGKT L ++ H +++ YG A+ + P E+
Sbjct: 1381 DSVFIGAPNGSGKTVCAELALLHHWSQEDYGT-AVYIAPIQEI 1422
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 92 FYPCSIILLL*ADSNNHSVKLIDNYII 172
F+P I+LL+ N ++KL+D Y++
Sbjct: 123 FFPAYIMLLIQRQEYNKAMKLLDEYLL 149
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 319 GVGVLIPNVSNCLISHGFT-PNTANSFP 239
G+G L PN+ L SHGF+ P S P
Sbjct: 141 GLGGLFPNIHRELESHGFSLPTHEQSSP 168
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 374 CQNWVRKDICICPTHY 421
CQN +R++I CP+ Y
Sbjct: 1197 CQNLIRRNIVFCPSLY 1212
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +2
Query: 371 SCQNWVRKDICICPTHYPALGRGSIW 448
+CQ W R + + HY G IW
Sbjct: 520 TCQGWQRDSMSLFGMHYHHYGAQRIW 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,237
Number of Sequences: 5004
Number of extensions: 55907
Number of successful extensions: 182
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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