Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C11
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   1e-09
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = +3

Query: 243 KEFAVLGVKPWLIKQLLTLGIRTPTPIQKGCISRLLAGDDCIGAAKTGSGKTFAFALPII 422
           + F   G++  ++  +   G + PTP+QK  +  ++ G D +  A+TGSGKT AFA+PII
Sbjct: 196 ESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPII 255

Query: 423 QHLAE 437
             L E
Sbjct: 256 NTLLE 260



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 509 LRVCIVTGGSDQIEESLKLAKRPHIVVAMPGRLADHI 619
           L+  +  GG+  + +  KL+   HI+VA PGRL D +
Sbjct: 302 LKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFV 338


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 454 LHWFLLQHMSWLIRTTPKTQSLHSDRRIGS 543
           L WFLL    + I T  +   +H   ++GS
Sbjct: 307 LDWFLLMSFGYCIATLLEFAGVHYFTKVGS 336


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -2

Query: 412 RANANVFPDP---VLAAP-MQSSPANNRDIQPFWIGVGVLIPNVSNCLISHG 269
           R N    PDP       P + S P NN D  P    +GV   +VS+ +  +G
Sbjct: 177 RRNERRTPDPHDETAKKPRVLSPPLNNNDATPTDFSMGVKNNHVSSKVEGNG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,229
Number of Sequences: 438
Number of extensions: 3783
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)