Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C09
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.77 
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   2.3  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    27   3.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   3.1  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   5.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.4  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     25   7.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.2  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 453 RAGPVFVRPVCTL*SPVRRLVVEGGTTDARHPEGTSRTRCPHGN 322
           RA      PVC + S    +   G  ++A H   TS   C +GN
Sbjct: 207 RAAATSTTPVCNISSVTSAINSVGEISNASHSSSTSELPCTYGN 250


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 287 RRQPTANPVALITNDSRPRTARQSQNQNNEEKQPRKSHLK*LFTDIKNKES 135
           +R+PT   +     + RPR +RQ+   +  E    +   + + T+I + ES
Sbjct: 631 QREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSES 681


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 266 PVALITNDSRPRTARQSQNQNNEEKQPRKSHLK*LFTDIKN 144
           P  L T+  +P   + S N  NE K P+ + L+    ++KN
Sbjct: 29  PRFLATSVKKPNLKKPSVNSANETKNPKLASLEFQLENLKN 69


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 358 RGYIQDTLPSRQRRYTGVTPRS 293
           R Y +D  P R+RRY    PRS
Sbjct: 68  RSYREDERPRRERRYDDYEPRS 89


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 644 PIFGFRLNVQSGPAFSAPETA*LP 573
           P+ G + N+Q  P+F+AP+   LP
Sbjct: 254 PLLGSQTNLQLAPSFAAPQAHPLP 277


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 559 LGAYKGSNLFAPSTNKRAGNLSAASVSLSCKV*NRSGGSGLR 434
           LGAY+G+  FA    + A +++  S  L   + N S G   R
Sbjct: 115 LGAYRGNEKFASQHVQEAASMTQLSHLLPSSLINLSNGQSRR 156


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 414 RVCIRVVRRPDPPDLFHTLQLNETEAADRFPARLFVEGAKRLEP 545
           R C   +R+PD  +  + LQL++    +++P ++F+    R  P
Sbjct: 707 RFCYVQMRKPD--EAHNALQLHKKLLEEKYPIQVFISDPLRRTP 748


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 346 GCTLGVPCVCCSALHYQPT 402
           GC+ G+P VCC  L  +PT
Sbjct: 14  GCSSGIPNVCCLTLE-KPT 31


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 317 PPLP*GQRVLDVPSGCLASVVPPSTT 394
           PPLP   R +  P+  L++ V PS+T
Sbjct: 414 PPLPQRSRTISSPNSPLSATVLPSST 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,182
Number of Sequences: 5004
Number of extensions: 59593
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)