Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_C09
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 30 1.8
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 29 3.2
11_06_0548 + 24864868-24865455 29 4.2
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 29 4.2
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 29 4.2
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 7.4
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 7.4
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 28 7.4
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 28 7.4
10_08_0852 + 21073620-21074279,21074323-21074748 27 9.8
10_05_0080 - 8907628-8908182 27 9.8
>01_03_0045 +
11929624-11929890,11930500-11930551,11932683-11933103,
11933574-11934162
Length = 442
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 315 TRV*HLARRSTSAHCQSSRIDHQ*LPPPHCTTVPK 211
+RV H R+T C + R+D Q LPPP T P+
Sbjct: 382 SRVAHRKVRATCPKCPTRRLDRQSLPPP-STRAPR 415
>07_03_1760 -
29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 316 YTGVTPRSAFDVSPLPIQSH-*SPMTPAPALHDSPKTKTTKKNSRA 182
+ GVTPR F +SP H S +T A +L D K K+S A
Sbjct: 493 FEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVKKVNKSSGA 538
>11_06_0548 + 24864868-24865455
Length = 195
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 287 ERRARCYTRVPPLP*GQRVLDVPSGCLASVVPPSTTSRRTGLQS 418
+RR R VP P + PS + PSTTS TG Q+
Sbjct: 102 QRRLRYGVEVPGKPSSKAAGGAPSSVRSEEASPSTTSATTGAQA 145
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/101 (20%), Positives = 42/101 (41%)
Frame = -3
Query: 317 VHGCNTSLGVRRQPTANPVALITNDSRPRTARQSQNQNNEEKQPRKSHLK*LFTDIKNKE 138
VHG N L R + + + T + P+ +Q NQ+ ++ P +
Sbjct: 301 VHGSNMQLTNRSAASEAYINISTYGNSPKPVQQQFNQHPPQRIPTPVDISGSGNFYNTGS 360
Query: 137 SLITV*LSHYTREMSLPLKYQIVYNM*TNSIDERTSAPNEQ 15
S +T +H +LP + ++ + TN ++ ++ P Q
Sbjct: 361 SALTAANNHSMGATNLPSRSRMNSMLHTNQLNMQSIQPQPQ 401
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 280 SPLPIQSH*SPMTPAPALHDSPKTKTTKKNSRAN 179
SP P + SP+TPAPA T T K S N
Sbjct: 165 SPSPSPTPPSPLTPAPATTAPAPTPTAKSKSGQN 198
>07_03_1723 -
29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 580 SSRGSPSLGAYKGSNLFAPSTNKRAGNLSAASVS 479
SS+ SPS+ K S+ ST R GNL A S
Sbjct: 646 SSKSSPSISPIKPSSAGPSSTGFRTGNLEAFPTS 679
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 646 GPSSGSASTYKAARPFLLRKQRSSRGSPSLGAYKGSNLFAPSTNKRAGNLSAASVSLSCK 467
G S+GS+S Y + + + R GS S+G+ G L A S N+ + +C
Sbjct: 158 GSSTGSSSGYGSGG--VSYRSRGHGGSSSIGSGSGVGLGATSGVGAGSNVGPSGGCSTCG 215
Query: 466 V*NRSG-GSG 440
+RSG G+G
Sbjct: 216 SGSRSGSGAG 225
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 643 PSSGSASTYKAARPFLLRKQRSSRG-SPS 560
PSS S + A PFLL +Q S RG +PS
Sbjct: 70 PSSSSPTVPAAHSPFLLSRQNSGRGPAPS 98
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 343 DTLPSRQRRYTGVTPRSAFDVSPLPIQSH*SPMTPAPAL-HDSPKTKTTKK 194
D P R T R+ +D +P P + + TPAP++ DS T T KK
Sbjct: 296 DATPGRAGGATPSLKRNRWDETPTPGRMADADGTPAPSVAWDSSSTPTPKK 346
>10_08_0852 + 21073620-21074279,21074323-21074748
Length = 361
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 296 ARCYTRVPPLP*GQRVLDVPSGCLASVVPPSTTSRRTG 409
AR + + P G+RVL + GC A+V P S R G
Sbjct: 254 ARAWLPIAACP-GERVLLLGRGCSAAVPPSSAAGRAPG 290
>10_05_0080 - 8907628-8908182
Length = 184
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 353 PSGCLASVVPPSTTSRRTGLQSVHTGRTKTGPARPISHLAA**NRSCGQIPSAFVRRRRK 532
P+GC A PS TS R+ S ++ + PA P S + PSA++R R +
Sbjct: 43 PTGCFAGCFRPSPTSSRSSPPSCNSQADR--PASP----------SLIRSPSAWIRARGQ 90
Query: 533 EIRAFVRT*RRR 568
+ R RRR
Sbjct: 91 SFASSARHARRR 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,039
Number of Sequences: 37544
Number of extensions: 487388
Number of successful extensions: 1482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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