Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C09
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related ge...    28   6.6  
U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related ge...    28   6.6  
U40959-6|AAA81770.1|   95|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical
           protein F32A7.4 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
 Frame = +1

Query: 319 SVAVRAACP---GCTLGVPCVCCSALHYQPTNGTSECAYGSYEDRTRPTYFTPCSLMKQK 489
           +  V A CP   GC LGV   C     +QP       +     D T  + FT   L K +
Sbjct: 397 TATVLAPCPHDLGCPLGVHSSCTFNTRFQPIRADGRRS-EKESDGTEVSKFTYMILEKSQ 455

Query: 490 LRTDSQRVCS*KAQRD*SLCTHLT----TATRGSYAVSGAEKAGPLCTLRRNPKMG 645
            + +++   + +  ++  L  H+T    TA RG   ++ ++K G + T  R+ + G
Sbjct: 456 RKVNNEH--TERILKNRKLGGHVTCDVCTAFRGIQRITLSKKHGEMYTALRSRRDG 509


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 313 CTSVAVRAACPGCTLGVPCVCC 378
           C  VA+ A C GC +   C CC
Sbjct: 67  CCLVALLACCAGCCIADCCDCC 88


>U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related genes
           protein 1, isoformb protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 367 CVCCSALHYQ-PTNGTSECAYGSYED 441
           C+   ALH++  TNG  +CA G Y D
Sbjct: 144 CIPSPALHWECSTNGVRQCAVGWYGD 169


>U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related genes
           protein 1, isoforma protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 367 CVCCSALHYQ-PTNGTSECAYGSYED 441
           C+   ALH++  TNG  +CA G Y D
Sbjct: 144 CIPSPALHWECSTNGVRQCAVGWYGD 169


>U40959-6|AAA81770.1|   95|Caenorhabditis elegans Hypothetical
           protein B0310.6 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 268 LAVG*RRTPSEV-LHPCTSVAVRAA-CPGCTLGVPCVCCSALHYQPTNGTSECAYG 429
           LAV     P+++ L   + V +RA    GC  G  C   +A+   P  G   C YG
Sbjct: 39  LAVNGEELPTDIALEGQSEVMIRAKRYYGCGCGCGCATVAAVSPVPCGGCCGCGYG 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,246
Number of Sequences: 27780
Number of extensions: 380423
Number of successful extensions: 1247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)