Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_C06
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 27 1.8
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 26 3.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.3
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.3
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 7.3
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.7
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 9.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.7
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 187 IPNNLCGITIKPAKPSNSALPLSLVGRPI 273
IP N G+ P +NSAL LS+ G P+
Sbjct: 634 IPGNSRGMPTSPNSRNNSALDLSMHGIPL 662
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 3.2
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 6/141 (4%)
Frame = +1
Query: 4 MKQNIPSL*PTRF--IIDYKNINIPD*H*CNMASEDVIELGSSDDDTEPAPKKAKTRPNA 177
MK PS PT+ +ID N+ + H N S + + S+++ PK +P
Sbjct: 367 MKSIPPSKRPTKSTSLIDVTNVKVQRTHLANDISSEKQSIKSANEKAYVTPKSNSLKPG- 425
Query: 178 MVHIPNNLCGITIKPAKPSNSAL--PLSLVGRPITVTK-IPKDVN-PVSMKLKNNGCAIQ 345
+L I+ K N P + V + + K K+++ V + N
Sbjct: 426 ---FGKSLSDISNSATKNENVPFLPPRTGVSKYFKLQKNTEKEIDEQVPSQSNNTTPTSA 482
Query: 346 KNNSVSPRPVVRQYIRQSPKS 408
K++S SP+ + Q+P S
Sbjct: 483 KSDSASPQNWFSSFSYQTPNS 503
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 296 SLGILVTVIGLPTNDSGRALLDGFAGFIVIPQ 201
+L IL V + N++ + LL+GF+ I +PQ
Sbjct: 4392 NLKILSAVHEIHLNETEKILLEGFSKIICLPQ 4423
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = -3
Query: 488 LYCCGTFPILALFMLTKLTGIRHPVILLFGDCLIYCLTTGLGETELFF*IAHPLFFNFIE 309
+ C TF L+ L ++ + +P+ + ++ C TG G+T++ N++E
Sbjct: 266 ILCRKTF--LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVE 323
Query: 308 T 306
+
Sbjct: 324 S 324
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 271 ITVTKIPKDVNPVSMKLKNNGCAIQKNNSVSPRPVVRQYIRQSPK 405
+ V +IP+D P S ++ A+ ++SP + QY+ ++PK
Sbjct: 73 VKVQEIPQDQLPKS----SSDNAVTDRKTISPSGINNQYVIRNPK 113
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 377 TTGLGETELFF*IAHPLFFNFIETGLTSLGILVTVIGLPTNDSG 246
T G GE E F I + G L I++ G+PT+D G
Sbjct: 194 TEGYGEVEFFLSIMKVISV----IGFVILSIIIAAGGVPTDDRG 233
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 171 ECHGSHTK*SLWNNYKTRKAV 233
ECH +H L NN+K ++ V
Sbjct: 64 ECHFNHIDWDLGNNFKVKEGV 84
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 208 ITIKPAKPSNSALPLSLVGRPITVTKIPKDVNPVSMKLKNNGCAIQKN 351
I+I+ + S LS+ GRP+ +T I + ++ S+K C I+ +
Sbjct: 290 ISIETSNKSRVRPQLSIDGRPLGLTDIGQRIDITSVKDNAIPCIIRSH 337
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +1
Query: 85 CNMASEDVIELGSSDDDTEPA-----PKKAKTRP 171
CN +E+ + DD+TE P+K+K+ P
Sbjct: 632 CNQTFAPTVEITAKDDETESTSKGEEPQKSKSEP 665
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,050
Number of Sequences: 5004
Number of extensions: 50844
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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