Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_C06
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 28 5.6
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 28 5.6
12_01_0434 - 3418140-3418373,3418498-3418695 27 7.5
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 27 9.9
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 27 9.9
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 27 9.9
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 27 9.9
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884... 27 9.9
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 329 LFFNFIETGL-TSLGILVTVIGLPTNDSGRALLDGFAGFIVIP 204
+F +E G+ ++G L IGL T D+GR I++P
Sbjct: 186 VFIRGVELGIWVAIGYLAQAIGLVTADAGRTAFISSLTVIIVP 228
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 148 PKKAKTRPNAMVHIPNNLCGITIKPAKP 231
P+K RP + +P CGITI P
Sbjct: 255 PRKYSVRPTTGIVLPRGSCGITISMQPP 282
>12_01_0434 - 3418140-3418373,3418498-3418695
Length = 143
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 302 LTSLGILVTVIGLPTNDSGRALLDGFAGFIVIPQR 198
L L L V GLPT S L D A +++P R
Sbjct: 34 LRELQALCRVHGLPTGGSSADLADRLAALVILPGR 68
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 EDVIELGSSDDDTEPAPKKAKTRPNAMVHIPNNLCGITIKPAKPSNSALP-LSLVGRPIT 276
+++ LG++ D EP+P+K + + N G P + + P L P
Sbjct: 168 DELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPV 227
Query: 277 VTKIPKDVNPVSMKLKN 327
T + KDV+ V K ++
Sbjct: 228 QTVLAKDVHGVVWKFRH 244
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 546 VTIPLVSHSVSKWIRYKIFIILLWNIPYSCIIHVDQI 436
+T L+ + KW+R KI++ L+N P + IHVD +
Sbjct: 637 LTTMLMRKTKFKWMRNKIYLPRLYNWPET--IHVDLV 671
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 534 LVSHSVSKWIRYKIFIILLWNIPYSCIIHVDQIDWNSAPCH 412
L S+ V++ YK F I+L ++ +S I + +I+W P H
Sbjct: 221 LNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVH 261
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 534 LVSHSVSKWIRYKIFIILLWNIPYSCIIHVDQIDWNSAPCH 412
L S+ V++ YK F I+L ++ +S I + +I+W P H
Sbjct: 116 LNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVH 156
>01_05_0290 -
20487105-20487113,20487171-20487213,20488336-20488412,
20489096-20489163,20489266-20489456,20490687-20490798,
20490892-20490943,20491984-20492076,20493065-20493211,
20493381-20493410,20493764-20493862,20495188-20495322,
20495420-20495498,20495989-20496064,20496345-20496423,
20496513-20496547,20497185-20497259,20497405-20497804
Length = 599
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 94 ASEDVIELGSSDDDTEPAP 150
A+ DVI+L S DDD P P
Sbjct: 6 AAADVIDLSSDDDDEVPVP 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,628
Number of Sequences: 37544
Number of extensions: 288633
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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