Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C06
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    26   0.22 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   0.88 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   8.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 537 PLVSHSVSKWIRYKIFIILLW 475
           P +SH++SK  R   FII++W
Sbjct: 159 PFISHTMSKLSRAVKFIIVIW 179


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 136 TEPAPKKAKTRPNAMVHIPNNLCGITI 216
           T+P   + KT+P +  H+ ++   IT+
Sbjct: 248 TKPPKPQTKTKPTSPYHVSDHKAAITV 274


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 302 LTSLGILVTVIGLPTND 252
           L ++ I++T +GLPTND
Sbjct: 446 LITMLIVLTALGLPTND 462


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 244 LPLSLVGRPITVTKIPKDVNPVSMKLK 324
           LP    G P+T+T +PK     S KL+
Sbjct: 203 LPKWKDGIPVTLTTVPKHSKTKSPKLR 229


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -2

Query: 288 DFSNCNWPTH 259
           DF  C WP H
Sbjct: 577 DFCGCGWPQH 586


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 VHIPNNLCGITIKP 222
           VHI +++CGI  KP
Sbjct: 276 VHIIDSICGIDSKP 289


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 519 VSKWIRYKIFIILLWNIPYSCIIHVDQIDWNS 424
           +S W+     +IL W I Y  +    ++ W S
Sbjct: 69  MSCWMNVYYIVILAWAIFYFFMSMRSELPWGS 100


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 250 LSLVGRPITVTKIPKDVNPVSMKLKNNGCAIQKNNS 357
           +  +G  I   K+   V+PV    +NNG    K  S
Sbjct: 21  MKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTS 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,515
Number of Sequences: 438
Number of extensions: 3574
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)