Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C05
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.039
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.039
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 422  HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 520
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1036 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 422  HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 520
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1032 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 291 PSSSSKPRTTSLVIPYLSGT*IDCMVAPYEMTDT 190
           PS+S      S+V+   +G+ I+C ++P    D+
Sbjct: 351 PSTSECGEFRSVVVQKRNGSMIECNISPRSSADS 384


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 391 TR*QHWERSFTW 426
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 391 TR*QHWERSFTW 426
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 567 TMPCMSTLCRRQLKRP 614
           T+PC   LC +   RP
Sbjct: 40  TLPCKCHLCGKAFSRP 55


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 594 DIKSTCKALSSVTS*VMLVIRSPGY 520
           D+   CK L+S    ++   R+PG+
Sbjct: 468 DVSKRCKDLASFMGNLLQETRTPGF 492


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 136 LSKILNIQSHHVYYSKRMIQAAINN*ENN 50
           L  IL++  +H     +  Q +INN  NN
Sbjct: 112 LKVILDLVPNHTSDQHKWFQMSINNTNNN 140


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 594 DIKSTCKALSSVTS*VMLVIRSPGY 520
           D+   CK L+S    ++   R+PG+
Sbjct: 174 DVSKRCKDLASFMENLLQETRTPGF 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,852
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)