Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    28   1.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    28   1.4  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    27   2.4  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   4.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   5.5  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   5.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   9.5  

>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 525 IVFDKANEV*LAIPKKILKFEHQALLKNLLQTSHDFQ 415
           + F K + +    P+ + K+ H+AL +   + +HDFQ
Sbjct: 48  VYFAKPSPIDENYPRSVAKYLHEALYRQKGENNHDFQ 84


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 443  ICCKRLMIFNACVFFCIY*FLSIKVFGLCW 354
            +CCK+     A +   I  F+ I +F +CW
Sbjct: 1708 LCCKKFPSIFAAIAHTIQIFIFIAIFEVCW 1737


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 351 LPAKTEHFYR*KLINAKKNTSIENHETFATNSSTVLGVRISIFF 482
           LP  ++H     L+N   NT  ENH +  T++S+ L +++ I F
Sbjct: 42  LPPYSDH----ALVNNPPNTHRENHSSGTTDNSSPLLIKLLISF 81


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 443 FFNSAWCSNFNIFFGMAS*TSFALSKTI 526
           +FNSA CS+F I  G  S TS  L++ +
Sbjct: 190 YFNSAPCSSFMIKCGHVSNTSTELAENV 217


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 261 NQIAVATDLDRSFLVFPESVR*QISLYGWIPY 166
           N  +V+ DL  S+ ++  S    +S+Y W PY
Sbjct: 224 NLSSVSCDLTDSYSLWDPSSSGLVSIYAWAPY 255


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 174 IPYGTEASVKRSLGFNKRSQNH 109
           I +GT  ++KR LG +  S+NH
Sbjct: 205 IKFGTYEAMKRVLGISSSSENH 226


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 291 PTLLVPELESL*GSTKKTPNLPAKTEHFYR*KLINAKKNTSIENHE-TFATNSSTVL 458
           P++  P    L      TPNL    +      LIN +  TS+EN E TF   S   L
Sbjct: 244 PSIASPTSNRL-SHAPSTPNLFPNQDSSNTIDLINNRSKTSVENQERTFNLTSDVHL 299


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 103 VFMILGAFVKAQRPFYAGLSPIGYPAVETDLLSNRFGEDEEAPIE 237
           V +++G   +  R    G + +   A ETD+ S+RF  DE+A  E
Sbjct: 274 VEVVVGDLERDGRDTSLGDASVNEAAKETDVDSSRFISDEKAVTE 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,289
Number of Sequences: 5004
Number of extensions: 60276
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)