Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_C02
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    29   4.3  
11_01_0416 - 3178798-3178916,3191883-3192579                           28   7.5  
05_03_0416 + 13684604-13688050                                         28   7.5  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    27   9.9  

>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 287 RTNPSGT*TGKLMRLYEKDPKPSSKDRTLLS 379
           R+N SG  TGK   +++K P PS   +T +S
Sbjct: 257 RSNSSGNVTGKGNMIHKKPPYPSGSTKTAVS 287


>11_01_0416 - 3178798-3178916,3191883-3192579
          Length = 271

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 311 FRYQKG-WFSIGKEFIRLIRLPSPRTSIGASSSSPNLFDSK 192
           FR  KG WF +G   +    LP P T +G   S P+L   +
Sbjct: 83  FRNLKGQWFHMGFSGMSKPILPEPSTFLGCDGSYPSLLGGR 123


>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 10  CIQHGSCKQLVHSPDGLHQLNKMATLN 90
           C+  G C +L+  P G+  L ++A LN
Sbjct: 642 CLDLGYCHELMEFPKGIANLRRLAVLN 668


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 199 SNRFGEDEEAPIEVRGDG-NLINRINSLPIENQPFWYLNWKAYEALRKRP 345
           S+R+ E     I V G G N +NR+    ++   FW +N   ++A+R  P
Sbjct: 110 SHRYSEPRIKVIGVGGGGSNAVNRMIESDMKGVEFWIVN-TDFQAMRMSP 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,585
Number of Sequences: 37544
Number of extensions: 352192
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)