Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_C01
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 157 8e-40
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 155 5e-39
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.071
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.88
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.5
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.7
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 4.7
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.7
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 6.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.2
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 8.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.2
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.2
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 157 bits (381), Expect = 8e-40
Identities = 69/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +3
Query: 48 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 227
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 228 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 401
+I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 402 RYKSGKNKWFFQKLRF 449
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 155 bits (375), Expect = 5e-39
Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +3
Query: 48 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 227
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 228 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 401
+I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 402 RYKSGKNKWFFQKLRF 449
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.071
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 39 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 140
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.88
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 353
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 54 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 137
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 154 LSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGYSLY 26
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 124 SRITTKVPPTSRTGMPSSLVSTGT 195
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 312 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 446
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 4.7
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = -2
Query: 302 ITCWHQVIVVYNLDE-RLYLGPLVDFILSHPLVHFPG-VPVDTSDEGMPVRLVGGTFVVI 129
+ W + ++ + +L + P+ F H + FP V V TS + +
Sbjct: 485 LALWKKQVIFSKIGHPKLLVMPISSF---HCVQRFPDLVCVQTSTAETFLSVDRELTTYD 541
Query: 128 LDYDSLATRVPAT*DQHYFTRLHYLTHLGGIFPLLVDIESQH 3
L+ L P+ Q++ +H+L +G +FP LV ++ Q+
Sbjct: 542 LNTIKLLNTAPSRTAQNWLFIMHHLEIVGYLFPHLVHLDKQY 583
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 83 QHYFTRLHYLTHLGGIFPLLVD 18
Q YFT ++ G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 201 KVHKRMGKNKIHKRSKIKPFVKVV 272
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 323 FKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSH 216
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 306 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 422
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 306 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 404
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 8.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 404 PLFKTYSRVETQLLTLSRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFI 225
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 224 LSHP 213
P
Sbjct: 806 SDLP 809
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 8.2
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = -3
Query: 418 FPLLYLSSKRTRVLKRNFLRLAGSFRSFALNFSKLKSTV*RVGIK*L*FTTLTKGFILDL 239
F LL S+ L NF R+ +LN L V + I + L +LDL
Sbjct: 168 FNLLREESEGFSHLMINFFDALTCLRNKSLNEDYLIVQVNKSIISTIGAFDLDPNKVLDL 227
Query: 238 LWILFFPILLCTFRGYLSI 182
+ +LF LL ++R +LSI
Sbjct: 228 ILLLFSENLLDSWRFFLSI 246
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.2
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 249 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 386
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,643
Number of Sequences: 5004
Number of extensions: 41234
Number of successful extensions: 135
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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