Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B21
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    34   0.016
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   1.8  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   5.5  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   7.2  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   7.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   7.2  
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    25   7.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   9.5  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   9.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 24/90 (26%), Positives = 46/90 (51%)
 Frame = +3

Query: 294  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 473
            ++ K +  ++ +G+  S   V+  +E + V T  + + Y  LTD S+E      ENK  L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501

Query: 474  LVINKLLEPINVADSHWKQKTDKVVIFLGK 563
            L+I+   + +++  S +K K   ++ F  K
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNK 3531


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 462 KDYLLVINKLLEPINVADSHWKQ 530
           ++YLL+   +  P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 176 GFTLLGDQKT*DRTNNIKRKGNFDANGSITNTHNKYISSSAKEVSSQIEC 325
           GF  +GD+   D  NNI       +N    + H+K   S  K +  +I+C
Sbjct: 112 GFLTVGDEFYKDGVNNISSLLTSSSNQRFNDNHHK---SIVKRIRHEIKC 158


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +3

Query: 294  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 473
            +QK Y+       WD+SDK V  ++E  N   L K     K T  S  L    L   D  
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251

Query: 474  LVINKLLEPINVADSHWKQK 533
             +I+ L + +   D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 540 YLFFVSNDCLPHL 502
           ++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 306 TSFALELMYLLWVLVIL-PLASKFPFLLMLLV 214
           TS+ ++ MY  W+L+ L  L S   F   LLV
Sbjct: 91  TSYMVDYMYFSWILIFLAALTSVKVFAFYLLV 122


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 447 DNLENKDYLLVINKLL 494
           DNLEN DY+L +  LL
Sbjct: 569 DNLENDDYVLALRDLL 584


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 309  DTSFALELMYLLWVLVILPLASKFPFLLMLLVLS 208
            D S A+     +W++  LP+A     LL+LL+ S
Sbjct: 1560 DKSRAVNGFIRIWIMAALPIAISTAALLILLMFS 1593


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = +3

Query: 33  LFVISKDLHSIQTNCSFIKMSEAKIQEIRSDIEEFNDLLKQAKRKKVQDLLSLE 194
           L +I++ +    +N ++I + +  ++++ +    FN+  KQA   K +  ++ E
Sbjct: 54  LLIINEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATETKEEAAITEE 107


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 592 YETMLCLD*ILPRNMTTLS 536
           +E +LC+D ILP N+ T++
Sbjct: 71  HECVLCVDTILPANLQTIA 89


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 474 ASNLYFPDCPHAAPLIYLSIYNIPVPLV 391
           A   YF DC HA  +  +  YN  V +V
Sbjct: 268 AEQTYFQDCMHAVTVDLMRKYNKEVAIV 295


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 393 PKEQVYCKLTDKSMELHVDNLENKDYLLV 479
           PK+  +C+L +  +  H++ L++K + L+
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,018
Number of Sequences: 5004
Number of extensions: 52955
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)