Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_B20
(339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 159 4e-40
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.16
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 1.1
U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 29 1.1
Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical pr... 27 4.5
U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z81104-7|CAB70253.2| 647|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical pr... 26 6.0
U14524-1|AAA50785.1| 461|Caenorhabditis elegans avermectin-sens... 26 6.0
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 26 6.0
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 26 6.0
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 26 6.0
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 159 bits (387), Expect = 4e-40
Identities = 68/102 (66%), Positives = 89/102 (87%)
Frame = +3
Query: 33 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 212
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 213 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVQRQXVL 338
R R+ EARRKGRH G+GKRRGTANARMP+K LW++R VL
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVL 102
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 129 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 263
++T+S +N+R ++ D +K V H R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 141 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 254
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical
protein H03E18.2 protein.
Length = 204
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 339 LKPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLCFC 223
LKP++ IV +++Y L+LF+ + F +L FC
Sbjct: 105 LKPYIAHHIVMAISYCFCLFLFAMFAWKQHFFVEILSFC 143
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -2
Query: 248 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 111
++T FC+FAD S + R DD+ ++ + SG + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478
>Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical
protein F20E11.7 protein.
Length = 357
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 57 RLAASVMRCGKKKVWLDPNEI 119
++A + + CG K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191
>U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical
protein C04F6.2 protein.
Length = 87
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 247 FLRASVFLRTRARECTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 101
F +VFL + + +L +P+L+ F ++L I L+ FG N
Sbjct: 32 FPGTNVFLYLKHKASKTFAYLSGKPALMNFISFVVQLACCIFLLDFGVN 80
>Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical
protein F11A5.10 protein.
Length = 461
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 293 RIGCTSSLTKATVTTLSTCFCVFADTSAGVY-CYR 192
++G +SSL +T ST +C + T+ G+Y C R
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCT-SVTNTGIYSCLR 265
>Z81104-7|CAB70253.2| 647|Caenorhabditis elegans Hypothetical
protein M199.3 protein.
Length = 647
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = -1
Query: 330 FVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLCFCGHERGSVLLQVS**RDHP*SSYGC 151
F F+ + +VAY W + SDD V+ G + + + + P +Y C
Sbjct: 579 FTFINPMSTVAYPKWASSIGARDGSDDDCIVIKTVSGKKSVATVQSCTTMTSLPAQAYMC 638
Query: 150 --SVWSWCL 130
W W L
Sbjct: 639 GREAWVWNL 647
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 153 IRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMP 302
I K++KD V+K +A+ R R + GK++G A +R P
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTP 156
>Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical
protein K02C4.5 protein.
Length = 422
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +3
Query: 129 ANTNSRQNIR-KMIKDGLVIKKPV------AVHSRARVRKNTEARRKGR 254
A +R ++R KM DG VI+KP ++HS K++E GR
Sbjct: 91 AMRETRSSLRTKMAVDGTVIEKPKRRHFFNSIHSHLNSTKHSETENSGR 139
>U14524-1|AAA50785.1| 461|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl alpha protein.
Length = 461
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 293 RIGCTSSLTKATVTTLSTCFCVFADTSAGVY-CYR 192
++G +SSL +T ST +C + T+ G+Y C R
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCT-SVTNTGIYSCLR 265
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 51 QKRLAASVMRCGKKKVWLDPNEI 119
Q ++A + + CG +W DPN I
Sbjct: 321 QAQIAETSVTCGSDAIWQDPNGI 343
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 284 CTSSLTKATVTTLSTCFCVFADTSAGVYCYRFL 186
C +S+T TV ++ TC+ + V+C+ L
Sbjct: 91 CQTSVTTRTVHSIGTCWWIILFIGVFVFCWPIL 123
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 153 IRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMP 302
I K++KD V+K +A+ R R + GK++G A +R P
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTP 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,788,326
Number of Sequences: 27780
Number of extensions: 176867
Number of successful extensions: 561
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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