Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B20
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   0.76 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   9.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   9.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 29  QDEFPQAAEEACSLCYAMW*KEG 97
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 171 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 308
           +GL+    V   S A  R      RK     FG+ + T  + +P +
Sbjct: 221 EGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQ 266


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 151 FCLELVFAISLISFGSNHTFFLPHRITEAASLFCSL 44
           + + L+    LISF     F+LP    E  +L  S+
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISI 271


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 IKDGLVIKKPVAVH 206
           +KDG+V+   + VH
Sbjct: 286 VKDGIVLATGITVH 299


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 134 HQLQTEHP*DDQGWSRHQ 187
           HQ+ T+HP       +HQ
Sbjct: 170 HQMHTQHPHMQPQQGQHQ 187


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 IKDGLVIKKPVAVH 206
           +KDG+V+   + VH
Sbjct: 286 VKDGIVLATGITVH 299


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 114 HLDPTTPSFYHIA 76
           HL P  P FY I+
Sbjct: 890 HLTPLQPRFYSIS 902


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,746
Number of Sequences: 438
Number of extensions: 2160
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)