Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_B18
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 157 4e-39
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 73 9e-14
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 1.5
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 29 1.9
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208... 28 4.5
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 28 4.5
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 28 4.5
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 28 4.5
01_01_0485 - 3576989-3577173,3577476-3577795,3577895-3578178,357... 28 4.5
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 27 5.9
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 27 7.8
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 157 bits (381), Expect = 4e-39
Identities = 69/110 (62%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
Frame = +3
Query: 132 RFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHG 311
RF C+D+LRF++VNLD LTET+ +SFY Y+A WP+YF SP +MGYIMGK EG G
Sbjct: 6 RFCCDDLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQG 65
Query: 312 ENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEK-KKAYFVDLFVRVSH 458
E+WHGHVTA++V+ ++RR LA LMNLLEE+S+K KAYFVDLFVR S+
Sbjct: 66 ESWHGHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRASN 115
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 73.3 bits (172), Expect = 9e-14
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = +3
Query: 138 TCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK-AEGHGE 314
T +D+L NL L E Y + +Y ++ WP+ V E G I+GY++ K E E
Sbjct: 8 TIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEEDPSE 67
Query: 315 NWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKK-KAYFVDLFVRVSHK 461
HGH+T+L V +R+LGLA LM+ + ++ A +V L VR S++
Sbjct: 68 PCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNR 117
>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 171 NLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHG 326
++D + LS+ YL+ W ++ Q +E P + Y++G H +W G
Sbjct: 925 SIDMVIHIGDLSYANGYLSQWDQFTQQIE-PIASTVPYMIGSG-NHERDWPG 974
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 324 GHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYF 431
G++ L V+P +RR+GLA ++ +E E+ A +
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRMEAWFERMGAEY 140
>06_03_0539 +
21919115-21919313,21919474-21919582,21920595-21920819,
21921140-21921239,21921782-21921865,21922000-21922058,
21922578-21922770
Length = 322
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 123 HYDRFTCEDMLRF--NNVNLDPLTE-TYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMG 293
HY R + E + R N ++ P+ E TYG T+++A+W +F V E+ GY G
Sbjct: 254 HYARTSEEWLKRMDKNITSIRPIFEKTYGKESATKWIAYWRTFFISV----AELFGYNNG 309
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 GTVFNN*LK-VPTYKPTYKYNLRNENDNITTVLRV 144
G VFN + +KPTYKYN+ + N + + +RV
Sbjct: 216 GEVFNGYCEGTLLFKPTYKYNIGSSNYDTSYKIRV 250
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 195 YGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHGH 329
+G Y Q P Y+Q +G+ +GY A G G +H H
Sbjct: 264 HGYFAYPQQQGPPPSYYQYYGGGNGDGVGYANPNAGGAGGYYHPH 308
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 339 LTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSH 458
L VSP +RRLG+A L+ EE + A + + S+
Sbjct: 127 LRVSPSHRRLGIATELVRRAEEWCAARGAAYATMATTASN 166
>01_01_0485 -
3576989-3577173,3577476-3577795,3577895-3578178,
3579780-3580095,3580441-3580859
Length = 507
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 228 HWPEYFQVVESPSGEIMGYIMGKAEGH 308
+WP+Y + + S +IM + + K+ GH
Sbjct: 308 YWPQYTPITKRASHDIMLFTVSKSTGH 334
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 193 HMAYRFTRNIWHIGQNIFKLWNH 261
H+ Y+F RN IG+ I ++WNH
Sbjct: 550 HIIYQFERN-GAIGECIIRVWNH 571
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 282 YIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMN 392
Y+M K ++ HG V + + P + R G+ T+MN
Sbjct: 485 YLMLKGNSTPKDGHGAVDNMKIIPAHDRQGMFKTIMN 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,115
Number of Sequences: 37544
Number of extensions: 204661
Number of successful extensions: 443
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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