Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B13
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    75   1e-14
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   4.1  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   7.1  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 39/80 (48%), Positives = 50/80 (62%)
 Frame = +2

Query: 110 LKLXFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 289
           +K  FNQP R+ RR+Q R               +RP V+ PT+RY+ KVRAGRGFTL E+
Sbjct: 22  VKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGFTLEEL 80

Query: 290 RAAGLNPVFARTIGIAVDPR 349
           +AAG++   A TIGI VD R
Sbjct: 81  KAAGVSRRVASTIGIPVDHR 100



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = +3

Query: 357 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 533
           N+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A +
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVE 161

Query: 534 SVARPITEDEKNFKAYQYLRGARSIAKLVGIRA 632
             A+PITE+ KNF A+  L   R+ A+  G RA
Sbjct: 162 E-AKPITEEAKNFNAFSTLSNERAYARYAGARA 193



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 70  IPNGHFHKDWQRFVKT 117
           +PN HFHKDWQR+VKT
Sbjct: 9   LPNAHFHKDWQRYVKT 24


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 283  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 164
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 450 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 563
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 271 IHSS*N*GRRIEPSICPNDWNCCRSPXDATSLLNHCKSMFKE 396
           +H S N G  ++P +  N WN      D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,930
Number of Sequences: 5004
Number of extensions: 50093
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)