Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B13
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    86   2e-17
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    65   4e-11
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    28   5.0  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 42/84 (50%), Positives = 55/84 (65%)
 Frame = +2

Query: 110 LKLXFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 289
           +K  F+QPAR+ RR+QNR               LR +VRCP  RY+TK R GRGF+L+E+
Sbjct: 22  IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQEL 81

Query: 290 RAAGLNPVFARTIGIAVDPR*TQQ 361
           +AAG++   ARTIGIAVD R T +
Sbjct: 82  KAAGISQAQARTIGIAVDVRRTNK 105



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
 Frame = +3

Query: 357 NKSVESLQINVQRIKEYRARLILFPKGKKV-LKGEANEEERKLATQLRGPLMPVQQPAPK 533
           NK+ E L+ N  R+KEY+A+LILFPK      KG+++ EE K+A QLRG ++P+      
Sbjct: 104 NKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITF 163

Query: 534 SVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKD 647
              R +T+ E+  + ++ LR  R+  K  G R KR ++
Sbjct: 164 DEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRARE 201



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  KGNNMIPNGHFHKDWQRFVKT 117
           +GN M+ N HF K W + +KT
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKT 24


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 31/66 (46%), Positives = 41/66 (62%)
 Frame = +2

Query: 110 LKLXFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 289
           +K  F+QPAR+ RR+QNR               LR +VRCP  RY+TK R GRGF+L+E+
Sbjct: 22  IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQEL 81

Query: 290 RAAGLN 307
           +AA  N
Sbjct: 82  KAAEEN 87



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  KGNNMIPNGHFHKDWQRFVKT 117
           +GN M+ N HF K W + +KT
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKT 24


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 420  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 575
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 420  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 575
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 420  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 575
            ++F   K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 581 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 450
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 581 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 450
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 429 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARS 605
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 606 IAKLVGIRAKRLK 644
             K  G + K  K
Sbjct: 103 SKKATGSKKKNKK 115


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 435 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 530
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 435 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 530
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,038
Number of Sequences: 27780
Number of extensions: 278355
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)