Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B11
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    90   3e-19
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    69   4e-13
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   1.8  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   3.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   4.1  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   7.2  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   9.5  

>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
 Frame = +1

Query: 127 DNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHX*ATVKCWITYIQDLPNGKE 306
           D+L  + E+  +     + +  +  R  ++L KGL+        V  WI      P+G E
Sbjct: 29  DHLDELEEQFTI---PTELLHRVTDRFVSELYKGLTTNPGDVPMVPTWII---GTPDGNE 82

Query: 307 RGKFLALDLGGTNFRVLIINL-GENHFDMQSKIYAIPKHIMTGTGIALFDHIAECLANFM 483
            G +LALDLGGTN RV  + + G   FD+    Y +P+ +  GT  ALFD+IA+C+  F+
Sbjct: 83  HGSYLALDLGGTNLRVCAVEVQGNGKFDITQSKYRLPQELKVGTREALFDYIADCIKKFV 142

Query: 484 KE-HGVYEERLALGFTFSFPLKQLGLTKGVL 573
           +E H    + L +GFTFS+P  Q  +    L
Sbjct: 143 EEVHPGKSQNLEIGFTFSYPCVQRSINDASL 173


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
 Frame = +1

Query: 277 YIQDLPNGKERGKFLALDLGGTNFRVLIIN-LGENHFDMQSKIYAIPKHIMTGTGI-ALF 450
           +I  LP G E G FLALD GGTN RV  I  LG+  ++M+     +P+  +    +  + 
Sbjct: 51  FISTLPTGAETGDFLALDFGGTNLRVCWIQLLGDGKYEMKHSKSVLPRECVRNESVKPII 110

Query: 451 DHIAECLANFMKEH-----GVYEER-LALGFTFSFPLKQLGLTKGVL 573
           D +++ +  F+KEH     G  EE  L +GFTFS+P  Q+ +T+  L
Sbjct: 111 DFMSDHVELFIKEHFPSKFGCPEEEYLPMGFTFSYPANQVSITESYL 157


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 143 ILCKLSTTMPIFYRYFPYLTPIGN 72
           ILC   T   I +RYFP+L  +G+
Sbjct: 233 ILCYFGTYSHIAFRYFPWLPHVGD 256


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
 Frame = +1

Query: 334 GGTNFRVLIINLGENHFDMQSKIYAIPKHIMTGTGIALFD---HIAECLA----NFMKEH 492
           G     +L   +G++     S I    K I  GTGI++FD   +I  C      +F K+H
Sbjct: 300 GSGKTTLLAYVVGDHPKLFASNIKFFGKSIGPGTGISIFDIQENIGHCSPEIHNHFPKQH 359

Query: 493 GVYEERL-ALGFTFSFP 540
             +E  L A   TF+ P
Sbjct: 360 TCFEALLSAWSTTFTIP 376


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 178 KQIKEIMCRLHNDLKKGLSRADHX*ATVKCWITYIQDLPN 297
           ++IK+++  L   +K GL+ +DH    + C++  I D P+
Sbjct: 433 QEIKQLIRLLEELIKTGLATSDHRLLLLSCYVE-IHDSPS 471


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 286 DLPNGKERGKFLALDLGGTNFRVLIINLGENHFDMQSKI 402
           DLP  +   +   +D G +N+ V I+      F ++S +
Sbjct: 191 DLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTV 229


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 95  PYLTPIGNHFKHNFKFTNYYTSCLYSKK 12
           PY  P  N F  N  F N++ + L S K
Sbjct: 102 PYNVPPENMFNQNPDFANFFQAMLQSAK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,732
Number of Sequences: 5004
Number of extensions: 58136
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)