Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B11
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   4.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   4.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 445 LFDHIAECLANFMKEHGVYEERL 513
           +FD +AE  A  M EHG  + ++
Sbjct: 34  VFDLVAEDKARCMSEHGTTQAQI 56


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 445 LFDHIAECLANFMKEHGVYEERL 513
           +FD +AE  A  M EHG  + ++
Sbjct: 34  VFDLVAEDKARCMSEHGTTQAQI 56


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 74  NHFKHNFKFTNYYTSC 27
           N++K+N+   NY  +C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 74  NHFKHNFKFTNYYTSC 27
           N++K+N+   NY  +C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 74  NHFKHNFKFTNYYTSC 27
           N++K+N+   NY  +C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 74  NHFKHNFKFTNYYTSC 27
           N++K+N+   NY  +C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 511 LALGFTFSFPLKQLGLTKGVLQK 579
           L L   +S+P +++G + GVL K
Sbjct: 612 LPLNIRWSYPGEEMGGSSGVLAK 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,256
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)