Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_B06
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   186   3e-48
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   185   6e-48
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.44 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    29   0.77 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.3  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   3.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.1  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.2  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   7.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.5  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  186 bits (452), Expect = 3e-48
 Identities = 94/160 (58%), Positives = 114/160 (71%)
 Frame = +3

Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 341
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106

Query: 342 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 521
            PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160

Query: 522 HTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 641
             GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +2

Query: 71  KRAPIRKKRKYELGRPAANTRLGPQRIH 154
           KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIH 44



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 22 MGISRDHWHKRRATG 66
          MGI+RD  HKR ATG
Sbjct: 1  MGITRDSRHKRSATG 15


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  185 bits (450), Expect = 6e-48
 Identities = 94/160 (58%), Positives = 114/160 (71%)
 Frame = +3

Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 341
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106

Query: 342 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 521
            PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160

Query: 522 HTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 641
             GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +2

Query: 71  KRAPIRKKRKYELGRPAANTRLGPQRIH 154
           KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIH 44



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 22 MGISRDHWHKRRATG 66
          MGI+RD  HKR ATG
Sbjct: 1  MGITRDSRHKRSATG 15


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 618 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 505
           D   + CLLR  H+RD  +  +  RK  N   G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +3

Query: 144 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 323
           +V +P  +R   T  R+L   +G  S  S  ++ +TR    V +AS+N L+   +   ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590

Query: 324 IVVVDATPFRQWYE 365
             V   TPF   +E
Sbjct: 591 STVQRQTPFHSPFE 604


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 339 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 518
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 519 FHTGRLLACVASR 557
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 135 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 314
           SVL +S    S+  + KYR   + T    WG E        I+  + +   E   T  L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187

Query: 315 KNAIVVV 335
           + A+ +V
Sbjct: 188 ELALTIV 194


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 222 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 395
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 396 K 398
           +
Sbjct: 310 Q 310


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 361 YHCLNGVASTTTIAFLTRVFVRTNS 287
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 283 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 197
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 432 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 602
           ++ K  +K A + L RQ+  K   A EE+    RLL       G+ GR    ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 207 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 67
           CPD + G  Y     V +  ++R  PS+++A    ++  LF+R+  ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 60   HRXGNVR--PYARRGSMS*GVP--LQTPGSVLSVSTPXRSRGGNTKY 188
            +R GN    PY  R  ++  +P  L   G +LSV     SRG  TKY
Sbjct: 1165 NREGNFLDVPYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 180  TKYRALRLDTGNFSWGSECSTRKTRI 257
            T YRA+ LDTG+     E +  K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,384
Number of Sequences: 5004
Number of extensions: 49852
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)