Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_B06
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 278 1e-74
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 278 1e-74
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 278 1e-74
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 278 1e-74
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 230 3e-60
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 120 4e-27
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 4.7
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 4.7
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 4.7
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 1e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +3
Query: 69 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 245
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 246 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 425
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 426 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 605
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 606 LEFYLRKIKSKRAK 647
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.38
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 1e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +3
Query: 69 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 245
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 246 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 425
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 426 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 605
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 606 LEFYLRKIKSKRAK 647
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.38
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 1e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +3
Query: 69 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 245
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 246 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 425
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 426 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 605
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 606 LEFYLRKIKSKRAK 647
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.38
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 1e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +3
Query: 69 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 245
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 246 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 425
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 426 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 605
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 606 LEFYLRKIKSKRAK 647
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.38
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 230 bits (563), Expect = 3e-60
Identities = 111/157 (70%), Positives = 128/157 (81%)
Frame = +3
Query: 177 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 356
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQ
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQ 91
Query: 357 WYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 536
WYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+L
Sbjct: 92 WYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKL 151
Query: 537 LACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 647
LAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 152 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
Score = 56.4 bits (130), Expect = 8e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2
Query: 68 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 157
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 34.3 bits (75), Expect = 0.38
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 120 bits (289), Expect = 4e-27
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +3
Query: 408 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 587
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 588 ILEGKELEFYLRKIKSKRAK 647
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 387 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 533
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 387 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 533
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 387 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 533
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 387 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 533
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,873,012
Number of Sequences: 237096
Number of extensions: 2069207
Number of successful extensions: 4816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4812
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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