Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_A21
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   196   2e-51
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    29   0.77 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   2.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   3.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.5  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.5  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   9.5  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  196 bits (478), Expect = 2e-51
 Identities = 96/121 (79%), Positives = 104/121 (85%)
 Frame = +1

Query: 49  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 228
           ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGR
Sbjct: 7   ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66

Query: 229 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 408
           RIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR
Sbjct: 67  RIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLR 126

Query: 409 F 411
           +
Sbjct: 127 Y 127



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 38/54 (70%), Positives = 47/54 (87%)
 Frame = +2

Query: 410 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 571
           ++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLR
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLR 180



 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 573 QGVLGIKVKIMLP 611
           QGVLG+KVKIMLP
Sbjct: 181 QGVLGVKVKIMLP 193


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 410  FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRARSTRN 589
            F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH    A+S RN
Sbjct: 1870 FAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH---GAKSVRN 1926


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 86  KTPSPTNFRFFEILFTGHDCNGSRE 12
           K  + + ++  E++F+GHDC G  E
Sbjct: 153 KVTNDSQWQNIEVIFSGHDCPGEGE 177


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 461 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRARSTRNQGQN 601
           LRG   ++ K+V G+++ +GD     +N+     L R+R TRN   N
Sbjct: 409 LRGCVLRNTKWVIGVVVFTGDDTKIMLNSGA-PPLKRSRITRNLNWN 454


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 187 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 363
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 364 IG 369
           +G
Sbjct: 784 LG 785


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 4   PSFSRLPLQSWPVNNISKKRKFVGDGVFKAELNEFLTRELAEDG 135
           P+ S L LQS P +  +   +F       A + E  + EL+EDG
Sbjct: 527 PNLSTLSLQSGPDSTATWHPEFPNSSGLSASIVEKYSGELSEDG 570


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 469  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 558
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 305 FSAYNSTDCSGMLNRFCTTEVSSR 234
           + +Y S+DC G+L+R   T+   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 467 GQRAKSMKFVDGLMIHSGDPCNDYVN 544
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 291 FYRLLWNVESLLYYGSQL 238
           FYRL W  + +LY  SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 365 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 207
           + L L+    A+     ++      S+     +N F  T  SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,178
Number of Sequences: 5004
Number of extensions: 56615
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)