Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_A21
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 150  SPGHSHPLGDHYYGHQDTKCARRERT 227
            S  H  PL +H Y   D+  +  ERT
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERT 1348


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 74  PTNFRFFEILFTGHDCN 24
           P N  + EI FT  DC+
Sbjct: 82  PANRMYIEIKFTTRDCS 98


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 333 DSAKTTSSHLFSIQFYRLLWNVESLLYYGSQ 241
           D +   S+H  +I  Y  LW ++S L   +Q
Sbjct: 122 DCSGIVSAHKIAIDEYERLWVLDSGLVNNTQ 152


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 28 QSWPVNNISKKR 63
          + W VNNI +KR
Sbjct: 33 EKWVVNNIKRKR 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,205
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)