Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_A11
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    62   4e-11
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    31   0.079
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   2.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    24   6.9  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   6.9  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +3

Query: 183 PSSKRRQKPLRKLCSVFECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 335
           P   ++ K  +K+    EC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 56  PVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 20  MVNVPKQRRTYXXXXXXXXXXXXXXXXXXXXXXT-LPRXRRRYDRKQQGYGGQSKPIFXX 196
           MVN+PK R+TY                      + L + +RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 197 XXXXXXXIVLR 229
                  +VLR
Sbjct: 61  KAKVTKKVVLR 71


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 30.7 bits (66), Expect = 0.079
 Identities = 13/69 (18%), Positives = 30/69 (43%)
 Frame = +3

Query: 33  QNSAGRTAKNVNATKYTRYHXYKKSKEKARCPGXEDVMIVNSRVTVVSPNPSSKRRQKPL 212
           ++   +   N++++   R    K +      P  ED M +     ++SP+  +   ++P+
Sbjct: 467 EDDLNQFTSNISSSSKPRKDNNKTANSSKPIPDSEDFMDITRPFNILSPSKEALSEEQPM 526

Query: 213 RKLCSVFEC 239
               +VF C
Sbjct: 527 ELTSTVFPC 535


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 180 NPSSKRRQKPLRKLCSVFECA-DCKVRSQVALK 275
           +PS+  R++ +++LC V+E   D  +R  +A K
Sbjct: 862 DPSTIVRKRAIKQLCEVYEATEDLNIRVDIASK 894


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 161 PAVYDHNVFXPWAACLFLGLFVXVIPCVLCGIY 63
           PA+ ++ +F  ++     G++  + PC+L  +Y
Sbjct: 346 PAIQNNIIFLEYSRTSKQGMWSILSPCILIAVY 378


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 84  LCTLWHLHFLQYVLRCFGTFTIFE 13
           L TL+H   + + + C G F +F+
Sbjct: 75  LLTLFHFPIIGFFVECLGFFNLFK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,490
Number of Sequences: 5004
Number of extensions: 23885
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)