Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_A05
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.4  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   3.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.5  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   9.5  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 400 LRYSHGIKGDIYLSV*KSLCFFPGYI 323
           L +SHGIK D Y+SV + L  F   I
Sbjct: 335 LTFSHGIKTDWYISVFRYLILFSSII 360


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 378  KETFI*AFEKAFVFFRDTSSHHFHINSSPNYR*NFIHFNILL-LYELKQIKSVFVHENST 202
            K+T         +FF +  S+    N +  +  N ++F + + L E + +KSV   +   
Sbjct: 3580 KDTITITLPLNIIFFSEVQSNELE-NKASKFM-NVVNFTLSISLLETQMLKSVISVQEPG 3637

Query: 201  DFDSHSYCFTLR 166
             F     CFTL+
Sbjct: 3638 VFKQKDNCFTLK 3649


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +2

Query: 422 LKKAVFLTICNSTYPLI*KNPIVINLA--NYFSYGLSYY 532
           LKK  F+T     + ++   PI++++   N+++YG+SY+
Sbjct: 289 LKKCKFVTTMG--FRMMLTEPIILSMGLYNFYAYGISYF 325


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 570 GISDNLFYY-MYVFSDYLVPYAKIRNSL 650
           G+ D+L Y  +Y F+DY +P  +  N L
Sbjct: 638 GLFDSLCYVSIYAFNDYSIPLVQFLNLL 665


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 95  PTDINLTKHKITKESRKYAIL-YMDLR 172
           P DINL + K T +S+ +A L Y D R
Sbjct: 57  PVDINLVRDKETGKSKGFAFLKYEDQR 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,241
Number of Sequences: 5004
Number of extensions: 48066
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)