Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_A02
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 69 4e-13
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 56 3e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 4e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 53 4e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 44 3e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 41 1e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 31 0.11
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.44
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 7.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.2
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 25 7.2
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 25 9.5
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 69.3 bits (162), Expect = 4e-13
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +3
Query: 129 KIPDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXX 308
++ D + + DKLVV+DF ATWCGPCK I PK ++ +
Sbjct: 4 QVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLSE 62
Query: 309 XASEYNINSMPTFVFVKNGKKLDEFSGAN 395
A+E +++MP+F KNG+K++E GAN
Sbjct: 63 IAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 56.4 bits (130), Expect = 3e-09
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +3
Query: 141 DLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASE 320
D TR++ DK+ V+DF A WCGPCK + P L+++ +E A +
Sbjct: 27 DYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQK 83
Query: 321 YNINSMPTFVFVKNGKKLDEFSGANV 398
+ ++PT V + G++LD GA+V
Sbjct: 84 NGVYALPTMVLFRKGQELDRIVGADV 109
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 180 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 356
+ +D A WCGPCK I P ++A++ AS + +MPTFVF
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 357 KNGKKLDEFSGAN 395
+NGK++D +GAN
Sbjct: 82 ENGKQIDMLTGAN 94
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 52.8 bits (121), Expect = 4e-08
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +3
Query: 123 TSKIPDDLKTRLAE--AGDKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXX 293
++++P K L E DK++++ F A WCG CK + P+ + A E+
Sbjct: 21 SAEVPKVNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDC 80
Query: 294 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSG 389
SEY+I PT KNGK++ ++SG
Sbjct: 81 TEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 174 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 353
K V+++F A WCG CK + P +++A E S +I+ PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432
Query: 354 VKNGKKLD 377
K K++
Sbjct: 433 FKANDKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 156 LAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINS 335
L +++++++F A W PCK + D+ A + A +++N+
Sbjct: 15 LQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEAEKFSDIAESFDVNA 73
Query: 336 MPTFVFVKNGKKLDEFSGAN 395
+P FV + K L SGAN
Sbjct: 74 VPLFVLIHGAKVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 165 AGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXXASEYNINSM 338
A K +I+F ATWCG CK + P +E+ A E A +Y+I
Sbjct: 37 ASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGF 96
Query: 339 PTFV-FVKNGKKLDEFSGA 392
PT + F +G + ++S A
Sbjct: 97 PTLIWFPPDGSEPVQYSNA 115
Score = 30.3 bits (65), Expect = 0.25
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 174 KLVVIDFMATWCGPCKMIGPKLDEI 248
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Frame = +3
Query: 168 GDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXA--SEYNINSMP 341
G LVV F A WCG CK + P ++A+ + A S+Y + P
Sbjct: 49 GPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFP 106
Query: 342 TFVFVKNGKKLDEFSGAN 395
T V K S +
Sbjct: 107 TIKLVYPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 207 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 377
CG CK +GP D E A E +S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 378 E 380
E
Sbjct: 114 E 114
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 561 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 454
N ++TD +NIF +F+ N + F L I C
Sbjct: 76 NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 506 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 598
+ +N +K+ +S+ L LIF VC LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 491 KNMYTFLINEEKMFLTSVMNLK 556
+N Y +L+NE+ FLTS+ +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 636 FYLLNCLITTGPIFFAFQRLQTLKINIFKF 547
FYLL+ I T P+F T I+I K+
Sbjct: 46 FYLLHVRINTSPLFIKTTTRPTALIHITKY 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,019
Number of Sequences: 5004
Number of extensions: 40180
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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