Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_A02
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.63 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.63 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.9  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 18  GAKLTCTLSLECFLFAF*TVILFLVSXLSCPRCPFTSKIPDDLKTRLAEAGDKLV 182
           GA   CT  L C + +F   ++ +VS L  P       +  D K  L   G+ LV
Sbjct: 141 GASRGCTAVLRCVVPSFVKDLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLV 195


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 18  GAKLTCTLSLECFLFAF*TVILFLVSXLSCPRCPFTSKIPDDLKTRLAEAGDKLV 182
           GA   CT  L C + +F   ++ +VS L  P       +  D K  L   G+ LV
Sbjct: 141 GASRGCTAVLRCVVPSFVKDLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLV 195


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 203 GRHEVDHDELVSGF 162
           G H+VD DEL++G+
Sbjct: 122 GDHDVDKDELITGW 135


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 445 LVSIYLCLRIVVLSLSTLAPE 383
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 445 LVSIYLCLRIVVLSLSTLAPE 383
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 63  QIRNTQVTTYKSIWRQN 13
           + + T  T YK +W QN
Sbjct: 280 EFKGTYKTLYKQMWSQN 296


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 594 FAFQRLQTLKINIFKFITDVKNIFSSFIKNVYM 496
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 81  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 594 FAFQRLQTLKINIFKFITDVKNIFSSFIKNVYM 496
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 64  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,311
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)