Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P24
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 70 2e-13
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 42 7e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 40 2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 34 0.014
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 31 0.13
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 30 0.18
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 29 0.31
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.41
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 29 0.54
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 0.94
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 5.0
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 25 5.0
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 70.1 bits (164), Expect = 2e-13
Identities = 29/48 (60%), Positives = 38/48 (79%)
Frame = +2
Query: 263 RGIVDAFVRIPKEQGLLSFWRGNFAXVIRYFPNQALNFAFKDKYKQVF 406
+GI + F R E+G++S WRGN A V+RYFP QALNFAFKDK+K++F
Sbjct: 72 KGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF 119
Score = 52.4 bits (120), Expect = 4e-08
Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +1
Query: 130 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKG 267
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKG
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKG 73
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +2
Query: 266 GIVDAFVRIPKEQGLLSFWRGNFAXVIRYFPNQALNFAFKDKYKQVFL-GGVDKXTXXLA 442
G+VD + + + GL +RG V+ + L F D K V L G ++
Sbjct: 177 GLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLVGPLEGNFLASF 236
Query: 443 LFRWVIXASGWVPPEP 490
L W + V P
Sbjct: 237 LLGWAVTTGSGVASYP 252
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 41.5 bits (93), Expect = 7e-05
Identities = 16/28 (57%), Positives = 26/28 (92%)
Frame = +1
Query: 145 LAGGISAAVSKTAVAPIERVKLLLQVQH 228
L+GG++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN 52
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 269 IVDAFVRIPKEQGLLSFWRGNFAXVIRYFPNQALNFAFKDKYKQ 400
+ V+I +GL+ F+RGN +R FP A+ FA + KQ
Sbjct: 59 LTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQ 102
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 136 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGYR 273
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ Y+
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRHGLYK 64
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 33.9 bits (74), Expect = 0.014
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 118 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 216
DP F++GGI+ VS+T AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 142 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 237
+LAGG++ +V++ + P++ +K +Q +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 30.7 bits (66), Expect = 0.13
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 121 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ 225
PV + +++G IS + V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 127 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQ 225
+F KDFLA G+S V++ V P + VK+ LQ Q
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 266 GIVDAFVRIPKEQGLLSFWRGNFAXVIRYFPNQALNFAFKDKYKQVF 406
G D +I K +G +RG ++ P +AL FA D Y +++
Sbjct: 47 GTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.5 bits (63), Expect = 0.31
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 85 IT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 219
+T +N SN P + F+AGG++ + A AP++ VK LQ
Sbjct: 34 LTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 266 GIVDAFVRIPKEQGLLSFWRGNFAXVIRYFPNQALNF 376
G++ F + EQG++ + G A ++R PN + F
Sbjct: 314 GLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.41
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 145 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 234
LAGGIS+ + + +AP + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 28.7 bits (61), Expect = 0.54
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 145 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKG 267
++GG+S A++ + P++ VK LLQ + S I ++ KG
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKG 248
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 0.94
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 136 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 225
KD +AGG + S VAP++ VK Q Q
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 251 TSVTRGIVDAFVRIPKEQGLLSFWRGNFAXVIRYFPNQALNFAFKDKYKQVFLGGVDK 424
T V G + + I +G+ +RG ++ Y P+ ++ F +K K +F GV+K
Sbjct: 48 TMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNK 103
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 275 DAFVRIPKEQGLLSFWRGNF 334
DAF +I K +GL +F+RG F
Sbjct: 235 DAFRKIYKYEGLAAFYRGLF 254
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 254 WSAAICLLTCCTWSSSLTRSMGATAV 177
WSA I +LT C SLT S+ T +
Sbjct: 543 WSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 142 FLAGGISAAVSKTAVAPIERVKLLLQVQ 225
FL+GG++A + T P E +K Q+Q
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQ 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,990
Number of Sequences: 5004
Number of extensions: 29523
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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