Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P22
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 2.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 5.4
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 5.4
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 25 7.1
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 9.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 9.4
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 9.4
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 9.4
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 9.4
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 FFKNMKRNLKDKMNENKHLNHGISKTLS-KTKPMNKTNR--KKGCRQRSNTNKXXXXXXX 259
F + +++++N+N + ++K LS K+ NK + KK RQ + +K
Sbjct: 734 FMVELPTPIRNEVNDNHEI--AMNKRLSLKSHADNKIDERGKKKIRQENAFDKLLQISKK 791
Query: 260 XITLNVPKVDY 292
T+N P VDY
Sbjct: 792 SKTINKPNVDY 802
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 500 VCVTRLRDSVRFKRQVAECTKRLMDSL 580
VCV RL DSV +R VA + L +L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGAL 155
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 65 ESNEIRLKFFKNMKRNLKDKMNENKHLNHGISKTLSKTKPMNKTNRKKGCRQRSN 229
+ + + L K R+ + +++ + H S++ S T P N+ RK+ R RSN
Sbjct: 93 QPSALALTSSKAANRSSTNTEKDSRSIAHSTSRSRS-TSPANRHRRKEKERTRSN 146
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 65 ESNEIRLKFFKNMKRNLKDKMNENKHLNHGISKTLSKTKPMN 190
E + +R K + LKD M K +K ++K KP N
Sbjct: 150 EESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKIKPKN 191
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 269 LNVPKVDYSSPPSIAAPHARPEQQYSLCCCCMELPCPKNLWLEYTW 406
+NVP +++ I P E + C +L P +L+LEYTW
Sbjct: 447 VNVPALEFDVSGCI--PLEPKELEDPNFCRKTDLDSPYSLYLEYTW 490
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +2
Query: 29 RKFIXSQVNLYCESNEIRLKFFKNMKRNLKDKMNENKHL 145
++F+ +C+ ++ LKF ++ R+LK+ + + L
Sbjct: 163 KEFVEDMKERFCQGKKLPLKFAYSILRDLKELLEKTPSL 201
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -2
Query: 441 SSICP*TSVFSIQVYSSHRFLGQGSSIQQQHKLYCC 334
+S+ + S + S ++ G+G++ + H +YCC
Sbjct: 99 ASLAAYLNTLSYSLDKSQQWFGKGNAWRVSHGVYCC 134
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 44 SQVNLYCESNEIRLKFFKNMKRNLKDKMNENKHLNHGISKTLSKT 178
S+VNL E+++ + K K K+N D + +NK G+ T T
Sbjct: 11 SEVNL--ETSKNKEKNIKGKKKNSLDPIEKNKQETAGLQTTSRPT 53
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 234 FVFDLCLHPFLRLVLFIGLVFDNVLLIP*FKCLFSFILSFKFRFIFLKN 88
F F C H FL L L + + P + CL +++L I + +
Sbjct: 378 FEFLSCYHSFLALQFSFELPDNVIYFAPGYICLHAYLLELTISVIHISD 426
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Frame = +2
Query: 122 KMNENKHLNHGISKTLSKTKPMNKTNRKKGCRQR----SNTNKXXXXXXXXITLNVPKVD 289
K NKH N KT S + R+K ++R N N +++
Sbjct: 1117 KQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKLNEQNPNIRNVPERSSSRFQGIRIN 1176
Query: 290 YSSPPSIAAPHARPEQQYS 346
YS PS + + E++ S
Sbjct: 1177 YSEAPSSSEEISEEEEEIS 1195
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 23 NFRKFIXSQVNLYCESNEIRLKFFKNMKRNLKDKMNENKHLNHGISKTLSKTK 181
N K+I S++ + RLK + K N + + K + G S TL +TK
Sbjct: 184 NTIKYIESELEELEREDFTRLKKVQKTKENAEKADSVTKEEHQGGSNTLQQTK 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,996
Number of Sequences: 5004
Number of extensions: 50552
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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