Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P22
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0112 - 12986547-12988502 31 0.79
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 30 1.4
10_08_0898 + 21424379-21424792,21424974-21425723 29 3.2
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 29 4.2
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 28 5.6
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 7.4
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913... 28 7.4
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 27 9.7
>10_07_0112 - 12986547-12988502
Length = 651
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 554 CTKRLMDSLRDVKIAAGSTERIKEEFSPADH 646
CT RLM++L D+ I GS E K F +H
Sbjct: 261 CTVRLMNALMDMYIKCGSLEMAKSVFERIEH 291
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 333 SSSTVYAAAVWNSLAPRTCGLNTPGWKTPKSTGKCSNN 446
S++ + VW S+A T G K P S KCS+N
Sbjct: 682 STAAIVEDKVWASIASETASAIKYGSKEPSSDSKCSSN 719
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 330 RSSSTVYAAAVWNSLAPRTCGLNTPGWKTPKSTGKCSN 443
RS +T AAA W+SL PR ++P S SN
Sbjct: 204 RSRATAAAAAAWHSLVPRPPSQSSPSSSCSSSDFPSSN 241
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 74 EIRLKFFKNMKRNLKDKMNE--NKHLNH--GISKTLSKTKP---MNKTNRKKGCRQRSNT 232
E+R F +N +L DK+N NK G S+ T+ N+T+RK CR+ SN
Sbjct: 350 ELRCLFKENFISDLLDKVNSVVNKETEQELGGSRCSCFTESGEVNNETSRKSACREDSND 409
Query: 233 N 235
N
Sbjct: 410 N 410
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +2
Query: 74 EIRLKFFKNMKRNLKDKMNENKHLNHGISKTLSKTKPMN 190
E ++ K+M ++L++K+N + NH + + +T+P N
Sbjct: 962 ESQINELKSMMQSLQEKLNSTEAENHVLRQQAMRTRPDN 1000
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 407 MENTEVYGQMLEQCFGFNFPEDIRPKQQICEVCVTRLRDSVRFKRQVAECTKRLMDSLRD 586
+ N E+Y + +GFNFP I ++ V + ++ + T L D++ +
Sbjct: 434 IRNGEIYQKSKPMTYGFNFPLQIEKGDDPFKL-VQKYTIDLQEGDAIVTATDGLFDNVYE 492
Query: 587 VKIAAGSTERIKEEFSPAD 643
+IAA ++ ++ P++
Sbjct: 493 EEIAAVISKSLEAGLKPSE 511
>01_05_0720 -
24588623-24588658,24588888-24589196,24589449-24591366,
24591412-24591693,24592027-24592328
Length = 948
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
Frame = +2
Query: 344 SLCCCCMELP-CP---KNLW 391
S CCCC P CP KNLW
Sbjct: 567 STCCCCFPKPSCPRRIKNLW 586
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 395 EYTWMENTEVYGQMLEQCFGFNFPE 469
EY W T V Q + Q FGF+ PE
Sbjct: 374 EYFWKAFTSVLNQNVLQNFGFSLPE 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,770
Number of Sequences: 37544
Number of extensions: 320111
Number of successful extensions: 951
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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