Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P22
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 30 1.2
U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical pr... 30 1.6
U00040-3|AAM22033.1| 638|Caenorhabditis elegans Hypothetical pr... 30 1.6
U53151-4|AAB37066.1| 335|Caenorhabditis elegans Hypothetical pr... 29 2.1
U97405-8|AAB53011.1| 425|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical ... 29 3.8
AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical ... 29 3.8
U41557-1|AAA83300.1| 418|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 8.7
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 8.7
AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 559 GAFGDLPLEPNRIPEPRDADLAYLLFRPD-VFWEIKSKTLFEHL 431
G DLP EP RI R A + YL RP+ + W K L ++L
Sbjct: 454 GFDNDLPFEPQRIEGTRGAGV-YLRLRPNKLGWAQNKKNLLDYL 496
>U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical
protein T10H10.3 protein.
Length = 389
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 290 YSSPPSIAAPHARPEQQY-SLCCCCMELPCPKNLWLEYTWMENTEVY 427
+ S ++ + H QQY S C C ++P P+N +E+T EN Y
Sbjct: 185 FQSLQTLPSEHLMTIQQYRSSCDCSSDIPLPENWAVEFT-TENQPYY 230
>U00040-3|AAM22033.1| 638|Caenorhabditis elegans Hypothetical
protein C18H2.3 protein.
Length = 638
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 23 NFRKFIXSQVNLYCESNEIRLKFFKNMKRNLKDKMNENKHLNHGISKTLSK 175
N+ K + +++ + SNE+R + K ++ + E +LNH ++ L+K
Sbjct: 79 NYSKEVDDEISKHNPSNEVRQFWSTEYKTTIRKMIEEMDNLNHFANEILNK 129
>U53151-4|AAB37066.1| 335|Caenorhabditis elegans Hypothetical
protein T05B11.1 protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 469 FWEIKSKTLFEHLPVDFGVFHPGVFKPQVL 380
F ++ S+ +HL +DF FHP + +VL
Sbjct: 167 FMDLLSRMTIKHLYIDFCTFHPSLISDKVL 196
>U97405-8|AAB53011.1| 425|Caenorhabditis elegans Hypothetical
protein T09B4.9 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 89 FFKNMKRNLKDKMNENKHLNHGISKTLSKTKPMNKTNRKKGCRQR 223
F N+ N++D+M +NK L + ++ + +N+++ K R++
Sbjct: 38 FLNNLIDNVRDEMQKNKELQEHQQQLKARMQELNESDALKDARKK 82
>AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical
protein cTel55X.1a protein.
Length = 222
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 368 LPCPKNLWLEYTWMENTEVYGQMLEQCFGF 457
LP P W + W+ ++Y Q+L GF
Sbjct: 30 LPIPYQTWSRFVWLTIIDLYMQLLYHTIGF 59
>AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical
protein cTel55X.1b protein.
Length = 233
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 368 LPCPKNLWLEYTWMENTEVYGQMLEQCFGF 457
LP P W + W+ ++Y Q+L GF
Sbjct: 30 LPIPYQTWSRFVWLTIIDLYMQLLYHTIGF 59
>U41557-1|AAA83300.1| 418|Caenorhabditis elegans Hypothetical
protein C50F7.6 protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 NVPKVDYSSPPSIAAPHARPEQ-QYSLCCCCMELPCPKNL 388
N+P S PP++ PH PEQ + ELP P+++
Sbjct: 115 NLPTSSSSRPPTVLLPHDSPEQPSRPIHRMHQELPIPEDV 154
>Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical
protein H13N06.3b protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 521 DSVRFKRQVAECTKRLMDSLRDVKIAAG 604
D +RF+++VAEC LMD L D G
Sbjct: 129 DEIRFEKEVAECKAFLMD-LIDTSTTGG 155
>Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical
protein H13N06.3a protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 521 DSVRFKRQVAECTKRLMDSLRDVKIAAG 604
D +RF+++VAEC LMD L D G
Sbjct: 158 DEIRFEKEVAECKAFLMD-LIDTSTTGG 184
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 95 KNMKRNLKDKMNENKHLNHGISKTLSKTKPMNKTNRK 205
KNMK+ KDK + K SK K+K KT RK
Sbjct: 759 KNMKKKKKDKKEKEKKKK---SKKSKKSKKEKKTKRK 792
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = -3
Query: 434 FARRLRCFPSRCIQA-TGSWGKGVPYSSSINCTAAPDEHEALL*ME---VSCNQLLERLR 267
+ R + P+R A T ++GK +P S+ I+ AAP A+ + CN L+
Sbjct: 1130 YGMRCKIMPTRIRHAATVAYGKMMPLSAEISAFAAPSFFSAMTKSSSILLRCN-LVAACC 1188
Query: 266 *FQ*SVPVLFCLYSISAYIPSCD 198
F + P LF L++ S + S D
Sbjct: 1189 DFAFAQPTLFELFAQSLFRMSQD 1211
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = -3
Query: 434 FARRLRCFPSRCIQA-TGSWGKGVPYSSSINCTAAPDEHEALL*ME---VSCNQLLERLR 267
+ R + P+R A T ++GK +P S+ I+ AAP A+ + CN L+
Sbjct: 1086 YGMRCKIMPTRIRHAATVAYGKMMPLSAEISAFAAPSFFSAMTKSSSILLRCN-LVAACC 1144
Query: 266 *FQ*SVPVLFCLYSISAYIPSCD 198
F + P LF L++ S + S D
Sbjct: 1145 DFAFAQPTLFELFAQSLFRMSQD 1167
>AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical
protein Y48G8AR.2 protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 305 SIAAPHARPEQQYSLCCCC---MELPCPKNLWLE 397
S+++ A+ Q+YSLC C EL KN W++
Sbjct: 128 SVSSGSAQNPQKYSLCTVCYSERELSAAKNEWVQ 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,220
Number of Sequences: 27780
Number of extensions: 289898
Number of successful extensions: 915
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -