Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P20
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 70 2e-13
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 2e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 1e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 4e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 4e-05
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 3e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 7e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.004
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.011
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.011
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.015
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.025
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.14
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 29 0.24
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.24
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.31
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.41
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 28 0.55
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.55
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 0.72
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.72
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 1.7
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 1.7
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.7
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 25 3.9
SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf... 25 3.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 6.7
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 24 8.9
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 24 8.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.9
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 24 8.9
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 69.7 bits (163), Expect = 2e-13
Identities = 35/88 (39%), Positives = 58/88 (65%)
Frame = +1
Query: 100 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLED 279
P+PSEPP+ A+VGNL + + D+ F + + ++RLV+D T++ +GF YVEFE +
Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADT 145
Query: 280 LMKAIDLNGIINVDGNILKIDVAEEKRN 363
L A+ L+G ++ G ++I VAE +R+
Sbjct: 146 LSAALALSG-EDLMGRPVRITVAEPRRS 172
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.4 bits (105), Expect = 2e-06
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 109 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 285
SEP +VGNL + D++ F I+++RL D ++ + KGF YV F ++
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 286 KAIDLNG 306
K +++NG
Sbjct: 422 KCVEMNG 428
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
+VG L + + + F + +I R++MD ++ + KG+ YV+FE E A+ NG
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325
Query: 307 IINVDGNILKIDVAEEK 357
+DG ++ +D++ +
Sbjct: 326 TKEIDGRMVNLDLSNPR 342
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 1e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 100 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLE 276
P+P + +VGNL + + R F D SI VR+V D +T+ KGF Y++F+
Sbjct: 263 PMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTM 322
Query: 277 DLMKAIDLNGIINVDGNILKI 339
+ KA+ LN +G L+I
Sbjct: 323 GVDKALLLNEKKMPEGRTLRI 343
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.9 bits (94), Expect = 4e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 112 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 288
EP +VGNL D+ F + I+ VRL+ ++T K KGF +V+F ++ MK
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
Query: 289 AIDL 300
A++L
Sbjct: 285 AMEL 288
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.9 bits (94), Expect = 4e-05
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLSIK-NVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
Y+GNL + + DI +F + ++ LV DKET K KGF ++++E + A+D
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMT 93
Query: 307 IINVDGNILKID 342
+ + ++++D
Sbjct: 94 NVKLLDRLVRVD 105
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 39.1 bits (87), Expect = 3e-04
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 106 PSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDL 282
P EP V NL + + I IF I ++ + + K+++ KG+CY+E+ Y +
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQA 153
Query: 283 MKAIDLNGIINVDGNILKIDV 345
A+D +DG L + +
Sbjct: 154 ANAVDKMNNAELDGEELFVSI 174
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 37.9 bits (84), Expect = 7e-04
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 100 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE 276
P S Y V + + + +F D +KN+ L +D+ T KG+ +E+ LE
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 277 DLMKAIDLNGIINVDGNILKIDVA 348
KA+D + +D L++D A
Sbjct: 63 QAQKAVDEKNLSLLDEK-LEVDFA 85
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 291
+ ++ NL + D+ +F P ++ V + +DK+T+ KGF Y++F +D ++A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.9 bits (79), Expect = 0.003
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEF 264
+VGN+P + + + IF + +K +LV+D ET KG+ + EF
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.004
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVGN+ + ++ F S+ V ++ DK T KGF Y+EF + A+ LNG
Sbjct: 58 YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNG 117
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 297
YVG L + + + +F + + ++R+ D T + G+ YV F +ED KA+D
Sbjct: 83 YVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Score = 30.7 bits (66), Expect = 0.10
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
Y+ NL + I + + + +F I ++ LV D + DK +GF +V + E KA+D
Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 307 IINVDGNILKIDVAEEK 357
G L + A++K
Sbjct: 323 DKEYKGKKLYVGRAQKK 339
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.9 bits (74), Expect = 0.011
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
+V + S + + ++ +IF ++ +VR++ + T +GF ++ F +E+ AID
Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163
Query: 307 IINVDGNILKIDVAEEKR 360
G +L + A+ R
Sbjct: 164 SQEFYGRVLNVQKAKRSR 181
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.9 bits (74), Expect = 0.011
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 112 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 288
E K +VG +P + + F + + L+MDK+T + +GF +V +E E ++
Sbjct: 244 EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVE 302
Query: 289 AIDLNGIINVDGNILKIDVAEEK 357
A I + G +++ A K
Sbjct: 303 ATMSQPYITIHGKPVEVKRATPK 325
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.015
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 303
YVGNLP ++ +F D+ S+ R+ + T + KGF V+FE D +I+ LN
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLN 341
Query: 304 G 306
G
Sbjct: 342 G 342
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.7 bits (71), Expect = 0.025
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVGNL + I +F I+ + + +D+ T GFC+VE+ +D + ++
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 307 IINVDGNILKIDV 345
++D I++ D+
Sbjct: 95 RTSLDERIIRADL 107
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 121 YKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 291
++ +VGNL + + + + F + S+ ++V D+E K +GF +V F+ + +KA
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKA 86
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 29.5 bits (63), Expect = 0.24
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 151 GIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVE 261
GI+ NR+ D + N R+V+D E + + YVE
Sbjct: 39 GILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTIVYVE 75
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.24
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 294
K Y+ NLP + + + + P + + +L+ + KGFC+ EF+ D AI
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.31
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 133 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 297
V NL + ++ +F I+ V L DKET + KGF +V + + +KA D
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARD 261
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.41
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 303
++G L + + I +++ L V+L+ ++ T G+C+VEF + A+ +N
Sbjct: 96 WMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.3 bits (60), Expect = 0.55
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -2
Query: 187 QEKFCLYRLE*FRRANFQRTPYMEA------LKVEDGPQ*FACRRQSXLELISSKPLRPA 26
+EKF + L FR +NF + PY+ + LK++D P +Q+ S+ L A
Sbjct: 625 REKFSIPALLSFRSSNFSKRPYVLSPILNGFLKLQDNPSSIYFAKQTDSRQSSASKLLYA 684
Query: 25 MFRNMEH 5
+ EH
Sbjct: 685 RLQAPEH 691
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 0.55
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEF 264
+VGNLP + F + +VR+ DK + + KG+ +VEF
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 0.72
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIF-PDLSIKNVRLV---MDKETDKFKG--FCYVEFEYLEDLMKA 291
YVGNLPS D++ +F P + ++ +K TD F ++ FE A
Sbjct: 23 YVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNA 82
Query: 292 I-DLNGIINVDGNILKID 342
I LNG + GN LK++
Sbjct: 83 IASLNG-SSFQGNTLKVE 99
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.9 bits (59), Expect = 0.72
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 112 EPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVE 261
EP + +VGNLPSG+ + F ++ ++R++ K + F F VE
Sbjct: 584 EPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVE 633
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 166 DINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKID 342
D+ IF I + +++ DKET + ++EF+ E + KA + +D + + +D
Sbjct: 259 DLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVD 318
Query: 343 VAE 351
++
Sbjct: 319 FSQ 321
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 112 EPPYKAYVGNLPSGIIQGDINRIFPDLSI 198
E YKA+V NL I GDI + P I
Sbjct: 212 EDGYKAFVSNLKEHIFNGDIFQAVPSQRI 240
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 196 IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 303
+ V L+ +KET K + F + +F L+D ++ N
Sbjct: 98 VSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEAN 133
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -3
Query: 357 FFFSDINF*YITIYVN----NPIQIYCFHQIFEIFKFYIAKSFEFVCL 226
FFFS +I I+++ N + +CF F +F F+ SF F L
Sbjct: 83 FFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFF---SFLFTSL 127
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 233 SVSLSITNLTFFIDRSGKILFISP*IIPEGKFPTYALYGG 114
SVS+ +L + R+G L + P ++ K YAL GG
Sbjct: 184 SVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGG 223
>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/46 (21%), Positives = 27/46 (58%)
Frame = +1
Query: 157 IQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 294
+Q + R L I +++++ +K ++K K V +Y+E +++++
Sbjct: 19 VQATLERKADSLHIGDLKIIKEKNSEKKKATLTVGNQYMEGVVESL 64
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 5.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 356 FSSATSIFNILPSTLIIPFKSIAFIKSSRYSNS--T*QNPLNLSVSLSITN 210
FS+++S+ I P + S +F K S S+S + +N + S SLS+TN
Sbjct: 482 FSTSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTN 532
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 208 RLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 300
+LV D TD+ G +++F Y +D +++
Sbjct: 307 KLVKDPATDRSLGRGFIKFRYEKDCQNCLEM 337
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 211 LVMDKETDKFKGFCYVEFEYLEDLMKAID 297
+V D D G YV F+Y E AID
Sbjct: 94 VVCDNVGDHLVGNVYVRFKYEESAQNAID 122
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 347 ATSIFNILPSTLIIPFKSIAFIKSSRYSNST*QNPLNLSV 228
A ++N+L K I FI + S+ T Q PL L +
Sbjct: 101 AQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDL 140
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 371 PRSFLFSSATSIFNILPSTLIIPFKSIAFIKSSRYSNST*QNP 243
P+SFL T +LP TL + + + SS S+ +P
Sbjct: 73 PKSFLTLRRTPALKLLPETLSVELSNEVNLTSSTTSSCVKPSP 115
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 332 NILPSTLIIPFKSIAFIKSSRYSNST*QNPLN 237
N PST+++P +A I S S+ST PLN
Sbjct: 725 NARPSTVLVPAMKMATILS---SSSTPMTPLN 753
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 365 SFLFSSATSIFNI-LPSTLIIPFKSIAFIKSSRYSNS 258
S +F + +F I STL++ F I F+K S S+S
Sbjct: 104 SQVFYNLHMLFGIDFVSTLVVSFPHITFLKESGNSSS 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,462
Number of Sequences: 5004
Number of extensions: 25324
Number of successful extensions: 112
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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