Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P20
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 56 1e-08
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 49 2e-06
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 48 4e-06
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 44 5e-05
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 41 5e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 37 0.006
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 37 0.006
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 37 0.006
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 37 0.006
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 37 0.007
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.017
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 35 0.022
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 35 0.030
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.052
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.052
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.069
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.069
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 33 0.091
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 33 0.12
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.12
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.12
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 32 0.21
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 32 0.21
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 32 0.21
Z81575-8|CAB04634.1| 433|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.28
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.28
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 0.85
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 0.85
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 0.85
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 0.85
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 0.85
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 1.1
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 29 1.1
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 29 1.5
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 28 2.6
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 28 3.4
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 28 3.4
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 3.4
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 55.6 bits (128), Expect = 1e-08
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 121 YKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 297
+ YVGN P + D+ F ++ NVR+V D+ET + +GF +VEF +A+D
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 298 LNGIINVDGNILKIDVAEEKRN 363
++ +G L++++A+ + N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 48.8 bits (111), Expect = 2e-06
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Frame = +1
Query: 121 YKAYVGNLPSGIIQGDINRI-----FPDLSIK--NVRLVMDKETDKFKGFCYVEFEYLED 279
+KA++G LP I DI I F D +K ++ LV D+++ FKGF YV FE +
Sbjct: 6 FKAFIGGLPYDSIATDIETILKHCKFTDEELKKFDIHLVHDRDSGSFKGFAYVTFENEQQ 65
Query: 280 LMKAID-LNGIINVDGNILKIDVAEEK-RND 366
+ AI LNG + +LK++ A+++ R+D
Sbjct: 66 MNTAISGLNG-ADFGNRVLKVNRAQQRDRSD 95
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 121 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 297
+ YVGN+P + +I F + + NVR+V D+ET + +GF +VEF +A++
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
Query: 298 -LNGIINVDGNILKIDVAEE 354
LNG+ +G L+++ A +
Sbjct: 66 QLNGVA-FNGRNLRVNYANK 84
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 121 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 297
+ YVGN P + ++ F + I NVR+V D+ET + +GF ++EF +A++
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 298 LNGIINVDGNILKIDVAEE 354
+G L++++A +
Sbjct: 65 QMNGAEFNGRPLRVNLANK 83
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
Y+G L + +GD+ +F + N+ L+ DK+T K KGF ++ ++ + A+D
Sbjct: 41 YIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFN 100
Query: 307 IINVDGNILKIDVAEE 354
I++ ++++D EE
Sbjct: 101 GISLHKRMIRVDHVEE 116
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 44.0 bits (99), Expect = 5e-05
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI-DLN 303
+VGN+ + + I IF ++ ++++V D+ET K KG+ ++EF ++ AI +LN
Sbjct: 21 FVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLN 80
Query: 304 GIINVDGNILKIDVA 348
G + G IL++D A
Sbjct: 81 G-YELSGRILRVDSA 94
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 40.7 bits (91), Expect = 5e-04
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 100 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE 276
P S + +V N+ + D++ F + IKN+ L +D+ T KG+ VE+E +
Sbjct: 48 PQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQK 107
Query: 277 DLMKAIDLNGIINVDGNILKID 342
+ +AID + ++ G +K+D
Sbjct: 108 EANEAIDQSNDTDLLGQNVKVD 129
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.1 bits (87), Expect = 0.001
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID- 297
+ ++ NLP + D+ +F + V++V+DK+T KGF VEF + E + A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 298 LNGIINVDGNILKIDVAEEKR 360
L+G + G ++ I +EKR
Sbjct: 340 LDGYV-FKGRMMHILPGDEKR 359
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 37.1 bits (82), Expect = 0.006
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 309
V NL S + D+ +F + I LV D+ + +GF ++ F +ED A D
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCN 139
Query: 310 INVDGNILKIDVAEEKR 360
++DG+ +++D + KR
Sbjct: 140 TDLDGHKIRVDFSLTKR 156
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 303
+VGNLP I + + F ++ VR+V DK+T K KGF +V F+ + A+ +
Sbjct: 249 FVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSME 308
Query: 304 GI 309
I
Sbjct: 309 TI 310
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 166 DINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
D+ F + ++++VR++ D T + KG CYVEF E + + LNG
Sbjct: 40 DLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNG 87
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 166 DINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
D+ F + ++++VR++ D T + KG CYVEF E + + LNG
Sbjct: 185 DLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNG 232
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVG + + + F P + + + MD E+ K +GF +VEF+ ED AID
Sbjct: 14 YVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMN 73
Query: 307 IINVDGNILKIDVA 348
+ G ++++ A
Sbjct: 74 ESELFGKTIRVNFA 87
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 35.5 bits (78), Expect = 0.017
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVGN+ G +I + F S+ V + D+ + KGF YVEF E + A+ +
Sbjct: 81 YVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTD 140
Query: 307 IINVDGNILKID 342
+ + G +K+D
Sbjct: 141 SL-LRGRQIKVD 151
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 109 SEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDK-ETDKFKGFCYVEFEYLEDL 282
+ P + + NL +++ + IF +IKNV L D+ +G+ YVE++ LED
Sbjct: 129 ASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDA 188
Query: 283 MKAIDLNGIINVDGNILKIDV 345
K+I +DG + +++
Sbjct: 189 EKSIKHMDGGQIDGMAVHVEM 209
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 34.7 bits (76), Expect = 0.030
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 121 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 297
+ +VG+L S I + F + +++ D T+K KG+ +V + ED +AID
Sbjct: 132 FHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAID 191
Query: 298 -LNG 306
+NG
Sbjct: 192 EMNG 195
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.052
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLE 276
P S K +VG LPS + D+ F + ++ DK+T + F ++ FE E
Sbjct: 103 PAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEE 162
Query: 277 DLMKA 291
KA
Sbjct: 163 SADKA 167
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.052
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLE 276
P S K +VG LPS + D+ F + ++ DK+T + F ++ FE E
Sbjct: 103 PAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEE 162
Query: 277 DLMKA 291
KA
Sbjct: 163 SADKA 167
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.069
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 303
K YVGNLP + + ++ IF ++ V D ++ + F +VEFE D A+
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYG--RIKYV-DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 304 GIINVDGNILKID 342
DG ++++
Sbjct: 67 DGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.069
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 303
K YVGNLP + + ++ IF ++ V D ++ + F +VEFE D A+
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYG--RIKYV-DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 304 GIINVDGNILKID 342
DG ++++
Sbjct: 67 DGYEFDGRRIRVE 79
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 33.1 bits (72), Expect = 0.091
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 133 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI-DLNG 306
V NLP + + ++ +F + + + + DK T KGF +V FE +D +AI +LN
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 307 I 309
I
Sbjct: 240 I 240
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI-DLNG 306
++G++P+ + ++++F + ++ D+ KG+C++EF ++ + + DLNG
Sbjct: 71 WIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDELKGYCFIEFITFDEARQTLYDLNG 130
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 309
+ NL D+ R F I +V + DK + + KGF +V F D A+D
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 310 INVDGNILKIDVAEEKR 360
VDG L++ +A+ R
Sbjct: 83 KLVDGRELRVTLAKYDR 99
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 309
+ NL D+ R F I +V + DK + + KGF +V F D A+D
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 310 INVDGNILKIDVAEEKR 360
VDG L++ +A+ R
Sbjct: 83 KLVDGRELRVTLAKYDR 99
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.21
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID- 297
+ YVG++ I + + R F P IK++ + D T K F +VE+E E + A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 298 LNGIINVDGNILKID 342
+NG + + G LK++
Sbjct: 163 MNGQM-LGGRNLKVN 176
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.9 bits (69), Expect = 0.21
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID- 297
+ YVG++ I + + R F P IK++ + D T K F +VE+E E + A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 298 LNGIINVDGNILKID 342
+NG + + G LK++
Sbjct: 163 MNGQM-LGGRNLKVN 176
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.9 bits (69), Expect = 0.21
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID- 297
+ YVG++ I + + R F P IK++ + D T K F +VE+E E + A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 298 LNGIINVDGNILKID 342
+NG + + G LK++
Sbjct: 163 MNGQM-LGGRNLKVN 176
>Z81575-8|CAB04634.1| 433|Caenorhabditis elegans Hypothetical
protein R08H2.9 protein.
Length = 433
Score = 31.5 bits (68), Expect = 0.28
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 199 KNVRLVMDKETDKFKGFCYVEFEYLEDLMK 288
K ++L++ K+ D G C ++F+YL +L +
Sbjct: 166 KPIKLILKKKADAISGSCEIDFDYLMELQR 195
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 193 SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKIDVAEE 354
+I + + +MDK T+ KG+ +V+FE + A+D V + K+ E+
Sbjct: 132 NIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQ 185
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 193 SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKIDVAEE 354
+I + + +MDK T+ KG+ +V+FE + A+D V + K+ E+
Sbjct: 106 NIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQ 159
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.28
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVG L + + + + + +V + D+ T +GF +VEF ED AI +
Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75
Query: 307 IINVDGNILKID--VAEEKRND 366
+I + G +K++ A EK D
Sbjct: 76 MIKLYGKPIKVNKASAHEKNMD 97
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.28
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVG L + + + + + +V + D+ T +GF +VEF ED AI +
Sbjct: 26 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 85
Query: 307 IINVDGNILKID--VAEEKRND 366
+I + G +K++ A EK D
Sbjct: 86 MIKLYGKPIKVNKASAHEKNMD 107
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 29.9 bits (64), Expect = 0.85
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGD-INRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++ +LP D IN P I + ++ +DK T+ K F +V +E + AI
Sbjct: 338 FIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 397
Query: 307 IINVDGNILKIDVAEEKRN 363
+ LK+ + ++ N
Sbjct: 398 GFQIGSKRLKVQLKVDRGN 416
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.85
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGD-INRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++ +LP D IN P I + ++ +DK T+ K F +V +E + AI
Sbjct: 502 FIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561
Query: 307 IINVDGNILKIDVAEEKRN 363
+ LK+ + ++ N
Sbjct: 562 GFQIGSKRLKVQLKVDRGN 580
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.85
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGD-INRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++ +LP D IN P I + ++ +DK T+ K F +V +E + AI
Sbjct: 502 FIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561
Query: 307 IINVDGNILKIDVAEEKRN 363
+ LK+ + ++ N
Sbjct: 562 GFQIGSKRLKVQLKVDRGN 580
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.9 bits (64), Expect = 0.85
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGD-INRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++ +LP D IN P I + ++ +DK T+ K F +V +E + AI
Sbjct: 431 FIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 490
Query: 307 IINVDGNILKIDVAEEKRN 363
+ LK+ + ++ N
Sbjct: 491 GFQIGSKRLKVQLKVDRGN 509
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.85
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGD-INRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++ +LP D IN P I + ++ +DK T+ K F +V +E + AI
Sbjct: 502 FIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561
Query: 307 IINVDGNILKIDVAEEKRN 363
+ LK+ + ++ N
Sbjct: 562 GFQIGSKRLKVQLKVDRGN 580
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
YVGNL + + +F ++ V + +D+ GFC+VE+ ED A+
Sbjct: 40 YVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNIS 99
Query: 307 IINVDGNILKID 342
+D +++ D
Sbjct: 100 NTRMDDRVIRAD 111
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++GN+ +I F I + DK T K K F Y+EF+ + A+ +NG
Sbjct: 58 FIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNG 117
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 130 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 306
++GN+ ++ F I + DK T K K F Y+EF+ + A+ +NG
Sbjct: 64 FIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNG 123
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 363 VSFFFSDINF*YITIYVNNPIQIYCFHQIFEIFKFYIAKSFEFVCLFIHN 214
+SFF S I + +N IQ++C I++ Y+ S F+ LFIH+
Sbjct: 41 ISFFSSSILAQNVVSLINLVIQLFCVCFIWK--NGYLKLSTFFIILFIHS 88
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYL---EDLMKAI 294
K YVG LPS ++ IF +R V + GF +VE++ + ED ++A+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFG--RIRKVW--VARRPPGFAFVEYDDVRDAEDAVRAL 59
Query: 295 DLNGIINVDGNI 330
D + I V +
Sbjct: 60 DGSRICGVRARV 71
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYL---EDLMKAI 294
K YVG LPS ++ IF +R V + GF +VE++ + ED ++A+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFG--RIRKVW--VARRPPGFAFVEYDDVRDAEDAVRAL 59
Query: 295 DLNGIINVDGNI 330
D + I V +
Sbjct: 60 DGSRICGVRARV 71
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 124 KAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYL---EDLMKAI 294
K YVG LPS ++ IF +R V + GF +VE++ + ED ++A+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFG--RIRKVW--VARRPPGFAFVEYDDVRDAEDAVRAL 59
Query: 295 DLNGIINVDGNI 330
D + I V +
Sbjct: 60 DGSRICGVRARV 71
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 193 SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKID 342
SI++V + D +T +GF + F+ + KAI+ + +DG+ + ++
Sbjct: 50 SIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHV-IDGDRVDVE 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,699,951
Number of Sequences: 27780
Number of extensions: 134981
Number of successful extensions: 432
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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