Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_P13
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.16 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.21 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   2.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.6  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   2.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   2.6  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    24   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   8.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 328 VSRDIRTTTEARRPGTARNTRRPKPTELSV 239
           V+R +RT+T  RRP T    R+PK    SV
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPKYARKSV 50


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 328 VSRDIRTTTEARRPGTARNTRRPKPTELSV 239
           V++ +RT+T  RRP T + +R+PK    SV
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 301 EARRPGTARNTRRPKPTELSVCCRERSETPRHRN 200
           EA  PG  RNTR+    ++S+    ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 314 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 216
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 277 RNTRRPKPTELSVCC--RERSETPRHRNKPSRPVWSRRSPHH 158
           RN +  K T  SV      R +  R  N P  P W+ R+ HH
Sbjct: 866 RNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +2

Query: 167 TPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 346
           TPS P  S   +P    + A+P        + T S       P + G P V A G+  PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488

Query: 347 GG 352
            G
Sbjct: 489 TG 490


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 352 TPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTE-LSVCCRERSET 215
           TP G  RAV    +  TEA +  T    R  +  E + + CR   E+
Sbjct: 168 TPRGPIRAVQVTAKQNTEAPKVSTTHIVRATEEEEWVELDCRPERES 214


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 283  TARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 152
            T+ +     P   SV  R +S+  RH    S    S+   HH H
Sbjct: 1268 TSSSMASAAPARTSVS-RSKSKAERHETSTSSRKSSKSGEHHHH 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,185
Number of Sequences: 5004
Number of extensions: 24655
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)