Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P05
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 26 5.4
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 5.4
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 7.2
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 7.2
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.2
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 9.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.5
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 343 KCQQLRKKLKV-QILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNL 519
K +L++++++ + H + LSP++ ++++ RNK+ + AT LRQ L
Sbjct: 72 KSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPELRQAL 131
Query: 520 KS 525
+S
Sbjct: 132 RS 133
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 5.4
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Frame = +1
Query: 244 LPSLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLKVQI--LVAPMMSHQNRH 417
L + I +KQ K + + + L NQQ +Q+ L KKL ++ + H
Sbjct: 253 LQAEIAVLKQNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETH 312
Query: 418 LSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQY 558
+ + L+N + K +T +K L+ KQI++
Sbjct: 313 CATIQTLENEVKEARKVKEESLTLANKFSDYDEIKRE-LSVLKQIEF 358
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.2
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +1
Query: 259 KQIKQKLKVPVTRAKKMPLRNQQFK-QMGKCQQLRKKLKVQI----LVAPMMSHQNRHLS 423
K K L P+T AKKM N+Q G + + V++ LV + +N+ +S
Sbjct: 283 KLAKANLAEPITEAKKMNKENKQENVGAGDDEDASESPMVRVTHLLLVIQAFTIKNKEVS 342
Query: 424 PTKQLKNLTLHQLRNKNHQM 483
+QL L +H L + NH +
Sbjct: 343 DDEQLCFL-IH-LNDTNHNL 360
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 409 NRHLSPTKQLKNLTLHQLRNKNHQMTAT 492
N+H+ P+K N L +L +K MT T
Sbjct: 763 NKHVQPSKHPSNHDLEELIHKYDAMTGT 790
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 504 VTSKPKKQPVKPIKTNP 554
V S+PK P KP++T P
Sbjct: 298 VQSRPKNYPQKPVQTTP 314
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = +1
Query: 268 KQKLKVPVTRAKKMPLR------NQQFKQMGKCQQLRKKLKVQILVAPMMSHQNRHLSPT 429
K+K K P KK+PLR + K + K QQ+R + + P+ +RHL +
Sbjct: 826 KKKDKAPSALCKKLPLRLNYSLWGNRAKSIPKSQQVRSFYINDLYILPV----SRHLKNS 881
Query: 430 KQLKNLTLHQLRN 468
L L+ + N
Sbjct: 882 ALLIPSILYHIEN 894
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +1
Query: 361 KKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ 540
KK++ ++ +A S +N + L+N H+L+N N+Q+ + + R+ +L N
Sbjct: 308 KKIE-ELSLAASRSSENENTIRRLALEN---HELKNSNNQLNNHIDDLTREKHLIALSNN 363
Query: 541 *KQIQYVHP 567
K +++ P
Sbjct: 364 PKGDEFLSP 372
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 114 IQADVNSLVHQYLEKIDK-SLAQTFMKKTKAKPRAKN--QQTLLDIIAK 251
+++ V L++ +L++ AQTF+K+T K AK ++ LLD++++
Sbjct: 6 MKSKVCPLIYHFLQENGYVKTAQTFLKETGDKDLAKGKVKKNLLDLLSQ 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,492
Number of Sequences: 5004
Number of extensions: 38164
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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