Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_P05
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993...    29   3.2  
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    27   9.8  

>12_02_0554 +
           20351660-20352299,20398588-20398907,20399120-20399344,
           20399375-20399818
          Length = 542

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +1

Query: 217 KTNKPS*TSLPSLIKQIKQKL--KVPVTRAKKMPLRNQQFKQMGKCQQLRKKLKVQILVA 390
           +  KPS     +   ++ QK+   VP+  A ++P   +  K +   ++     + +  + 
Sbjct: 267 RNRKPSVGEQFACFVEVIQKIHINVPLLDAMQVPTHARYLKDILNNKRPLPTTEGRSWLQ 326

Query: 391 PMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLR 510
             + H +  +  TKQ  N+ LH+L  K   +  T+   +R
Sbjct: 327 MNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCPTISCSIR 366


>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 241 SLPSLIKQIKQKLK-VPVTRAKKMPLR 318
           SLPSLI   KQK++ VP  +   +PLR
Sbjct: 227 SLPSLIPSTKQKIRIVPSYKPNMLPLR 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,818,732
Number of Sequences: 37544
Number of extensions: 215300
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)