Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P05
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 32 0.31
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 30 1.6
U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical p... 30 1.6
AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical ... 29 2.2
Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical pr... 29 3.8
L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange fa... 29 3.8
EF601082-1|ABQ96204.1| 370|Caenorhabditis elegans UNC-55a isofo... 29 3.8
EF601077-1|ABQ96199.1| 357|Caenorhabditis elegans UNC-55b isofo... 29 3.8
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 28 6.6
U56963-5|AAB38122.3| 323|Caenorhabditis elegans Serpentine rece... 27 8.7
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 238 TSLPSLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLKVQ 378
TSL +L+K + K+ P+ + +K+P + FK++ K +LRK L Q
Sbjct: 205 TSLLNLLKDV-DKMSEPLEQLQKLPSVFEPFKEVSKFMRLRKTLPHQ 250
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +1
Query: 391 PMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHPK 570
PM + QN + +Q +N+ +++ N+Q A + +QNL++ + Q +Q Q + P
Sbjct: 997 PMQNQQNIPIQHQQQQQNMMNQPMQSNNNQNMANIQN--QQNLQNPPIIQQQQQQQIPPA 1054
Query: 571 K 573
K
Sbjct: 1055 K 1055
>U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical
protein C28C12.1 protein.
Length = 200
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 405 PKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVK 536
PK AS+P A+ L++TPAKK E K +++PVK
Sbjct: 39 PKPASQP--ALSPLDLTPAKKVEEKVIEEKKVENNPKKEEEPVK 80
>AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical
protein Y67D8B.1 protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 193 KLKRNHVPKTNKPS*TSLP--SLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGK--CQQLR 360
+L +N + K + S T + S K++ + L+ +T A+ + Q GK LR
Sbjct: 78 QLIKNKLEKDFEGSGTKIRNCSSCKEVSENLQFCITCAQSQDILKQPSNN-GKWIAVPLR 136
Query: 361 KKLKVQILVAPMMSHQNRHLSPTKQLKNL 447
K L + L ++ H+ L+P L+NL
Sbjct: 137 KDLSIICLSCGVLEHKEHELAPIDMLENL 165
>Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical
protein F55D12.4 protein.
Length = 424
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 256 IKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLK 372
I++I +KLK V KM R++++ Q+ +C QL K +
Sbjct: 342 IEEIVEKLKSAVDEYCKMNKRSERYHQICECLQLLKSTR 380
>L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange
factor for arfs protein1 protein.
Length = 393
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +1
Query: 397 MSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHPKKK 576
MS + + + + +TL ++R + Q+ + + +N + + Q+ Y HPK K
Sbjct: 1 MSSRYSERNGLSETEKMTLPKVRKRKAQLVDEIEAL--KNEVREVDEELDQVYYTHPKSK 58
Query: 577 RNHQMTIVVMMNLRKKVHKN 636
H+ +++N RKK +++
Sbjct: 59 EYHK----IVVNGRKKFNQD 74
>EF601082-1|ABQ96204.1| 370|Caenorhabditis elegans UNC-55a isoform
protein.
Length = 370
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 256 IKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLK 372
I++I +KLK V KM R++++ Q+ +C QL K +
Sbjct: 288 IEEIVEKLKSAVDEYCKMNKRSERYHQICECLQLLKSTR 326
>EF601077-1|ABQ96199.1| 357|Caenorhabditis elegans UNC-55b isoform
protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 256 IKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLK 372
I++I +KLK V KM R++++ Q+ +C QL K +
Sbjct: 275 IEEIVEKLKSAVDEYCKMNKRSERYHQICECLQLLKSTR 313
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 75 ILDKNFKMNLTTEIQADVNSLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQ 224
I + NF+ ++ E + + +HQ EK+ + TF + T+ P +N+
Sbjct: 269 IEEDNFESTISIEKCSKLGIFLHQNAEKLARCQVDTFQRITRDLPPFRNK 318
>U56963-5|AAB38122.3| 323|Caenorhabditis elegans Serpentine
receptor, class v protein30 protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 322 QQFKQMGKCQQLRKKLK-VQILVAPMMSHQNR 414
+QFK M KCQ L KK K + I+ + +++H R
Sbjct: 282 KQFKAMLKCQLLNKKCKRIAIVPSGILNHAFR 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,036
Number of Sequences: 27780
Number of extensions: 215780
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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