Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P04
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 27 1.8
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 3.1
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 7.1
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 7.1
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 7.1
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.4
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 9.4
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 9.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 9.4
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 9.4
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 349 IFFRPWSSNCICWCGG 302
+F RPWS N +C C G
Sbjct: 1 MFLRPWSRNFLCSCRG 16
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 184 FGGRRKYIMVPFXPDV 231
+GG+RKYI F PD+
Sbjct: 945 YGGKRKYIFSSFNPDI 960
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 272 MFCTDKTPCLVPSITSGLKGTIIYLRRPPK*YLHQFLSASIVQSQLNPHLNISNNK 105
MF D+ + + +G+ +IY PPK + +S I+ QL +L + NK
Sbjct: 494 MFYVDRLNAFISFLIAGILVVVIYFTCPPKNW--GDVSQGIIYHQLRKYL-LQTNK 546
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 503 WKEALKQLDCGVRSMRVKWTLISW 574
W +A+K G+ + R KW +I W
Sbjct: 134 WTKAVKVTAVGLYNSRKKWVVIIW 157
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +1
Query: 448 SDIEKRGPSDGTSAAVPLLERGSETVGLWSAVYESQVDSHLMVSVTAAADCMVAAWK 618
SD+E S G +AA+ +E +T+G+ + V+ + + + A + W+
Sbjct: 19 SDLEAAVYSSGVAAALRSMELKGKTIGVMITASHNPVEDNGVKIIDADGGMLAMEWE 75
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 155 SIVQSQLNPHLNISNNKTTISRTEPYQE 72
SI +S++ P L N KTT S +EP +
Sbjct: 59 SICKSRIPPCLKGKNGKTTKSESEPMSQ 86
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 165 LKCFHCSISIKS 130
L+CFHCSIS S
Sbjct: 723 LRCFHCSISCHS 734
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 207 NIFTASPKVISPPVLKCFHCSISIKS 130
N+F+++P P+LKC I I S
Sbjct: 609 NVFSSTPSQYRYPILKCIQTWIFISS 634
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 323 LYLLVWWCSPLMSVQKSMFCTDKTPCLVPSITS 225
LY+L CS L+ + S F KTP L +T+
Sbjct: 342 LYMLGTECSRLLGFKDSYFMFHKTPSLRKVLTT 374
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 550 SQVDSHLMVSVTAAADCMVAAWKVDIDTKLIG 645
S SHL +++ ++D +VAA +V + T+ IG
Sbjct: 442 SSCSSHLSLALQKSSDIVVAAEEVKLATEDIG 473
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 361 GQLNIFFRPWSSNC-ICWCGGVLH*CRCRNQCFAPI 257
G +FF S N I CG + CR QC+AP+
Sbjct: 33 GGFPVFFDGCSLNPNIIKCGNCKNLCRLLLQCYAPL 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,314
Number of Sequences: 5004
Number of extensions: 61992
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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