Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_P03
(554 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p pro... 263 1e-70
AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB... 263 1e-70
AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA... 263 1e-70
BT014917-1|AAT47768.1| 1870|Drosophila melanogaster RE25258p pro... 32 0.45
AY060924-1|AAL28472.1| 148|Drosophila melanogaster GM06547p pro... 31 1.0
AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p pro... 31 1.4
AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-P... 31 1.4
AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p pro... 28 9.7
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 28 9.7
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 28 9.7
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 28 9.7
AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA... 28 9.7
>AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p
protein.
Length = 148
Score = 263 bits (644), Expect = 1e-70
Identities = 120/145 (82%), Positives = 130/145 (89%)
Frame = +1
Query: 43 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 222
+VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKL
Sbjct: 4 QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63
Query: 223 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 402
R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64 RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123
Query: 403 VTYKPVKHGRPGIGATHSSRFIPLK 477
+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148
>AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB,
isoform B protein.
Length = 147
Score = 263 bits (644), Expect = 1e-70
Identities = 120/145 (82%), Positives = 130/145 (89%)
Frame = +1
Query: 43 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 222
+VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKL
Sbjct: 3 QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 62
Query: 223 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 402
R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 63 RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 122
Query: 403 VTYKPVKHGRPGIGATHSSRFIPLK 477
+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 LTYKPVKHGRPGIGATHSSRFIPLK 147
>AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA,
isoform A protein.
Length = 148
Score = 263 bits (644), Expect = 1e-70
Identities = 120/145 (82%), Positives = 130/145 (89%)
Frame = +1
Query: 43 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 222
+VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKL
Sbjct: 4 QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63
Query: 223 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 402
R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64 RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123
Query: 403 VTYKPVKHGRPGIGATHSSRFIPLK 477
+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148
>BT014917-1|AAT47768.1| 1870|Drosophila melanogaster RE25258p
protein.
Length = 1870
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 8 NSSCQINKKHGLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMPVR 166
NS C N++ +R + +R VF +IS P SN WN MPVR
Sbjct: 42 NSKCLPNERRQIRD-QLTRSCVFFSIKRASSIISAIVAREPRSNQWNMLMPVR 93
>AY060924-1|AAL28472.1| 148|Drosophila melanogaster GM06547p
protein.
Length = 148
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 8 NSSCQINKKHGLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMPVR 166
NS C N++ +R + +R VF IS P SN WN MPVR
Sbjct: 3 NSKCLPNERRQIRD-QLTRSCVFFSIKRASSTISAIVAREPRSNQWNMLMPVR 54
>AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 208 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 336
L+KK R KK PP EK K + ++ E+V + IY+
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62
>AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-PA
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 208 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 336
L+KK R KK PP EK K + ++ E+V + IY+
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62
>AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p
protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 306 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 163
L ++H+ +Q+ H WLL+ S FL W +++ PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 213 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 308
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 213 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 308
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 213 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 308
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA
protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 306 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 163
L ++H+ +Q+ H WLL+ S FL W +++ PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,708,696
Number of Sequences: 53049
Number of extensions: 438205
Number of successful extensions: 1310
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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