Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_P03
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   207   5e-54
AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical...    30   1.3  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   3.0  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   3.0  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  207 bits (505), Expect = 5e-54
 Identities = 97/140 (69%), Positives = 112/140 (80%)
 Frame = +1

Query: 58  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 237
           LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71

Query: 238 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 417
            A   EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKP
Sbjct: 72  AAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKP 131

Query: 418 VKHGRPGIGATHSSRFIPLK 477
           VKHGRPGIGATHSSRFIPLK
Sbjct: 132 VKHGRPGIGATHSSRFIPLK 151


>AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.7 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 38  GLRSTKPSRKSVFSGSSLTGELISISSLI 124
           GL+ + P  K VF+G SL G + SI+S +
Sbjct: 137 GLKDSLPDHKIVFTGHSLGGAIASIASTV 165


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 47  STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 148
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 47  STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 148
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,565,220
Number of Sequences: 27780
Number of extensions: 221501
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)