Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_O06
         (657 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065004-1|AAH65004.1|  306|Homo sapiens coiled-coil domain cont...    39   0.018
AJ557013-1|CAD89526.1|  482|Homo sapiens C3orf6 protein protein.       39   0.018
AJ416916-1|CAC95196.1|  306|Homo sapiens C3orf6 protein protein.       39   0.018

>BC065004-1|AAH65004.1|  306|Homo sapiens coiled-coil domain
           containing 50 protein.
          Length = 306

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +3

Query: 486 QASDTMPKFGHVTDLREQWLVRTDGALAHRLQDREISSHLCENRYRNQQIREDFPVA 656
           + S    K   V ++   + V  D  LAH LQ++EI  HL  N  RN+ ++ D  VA
Sbjct: 3   EVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVA 59


>AJ557013-1|CAD89526.1|  482|Homo sapiens C3orf6 protein protein.
          Length = 482

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +3

Query: 486 QASDTMPKFGHVTDLREQWLVRTDGALAHRLQDREISSHLCENRYRNQQIREDFPVA 656
           + S    K   V ++   + V  D  LAH LQ++EI  HL  N  RN+ ++ D  VA
Sbjct: 3   EVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVA 59


>AJ416916-1|CAC95196.1|  306|Homo sapiens C3orf6 protein protein.
          Length = 306

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +3

Query: 486 QASDTMPKFGHVTDLREQWLVRTDGALAHRLQDREISSHLCENRYRNQQIREDFPVA 656
           + S    K   V ++   + V  D  LAH LQ++EI  HL  N  RN+ ++ D  VA
Sbjct: 3   EVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDLQVA 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,225,765
Number of Sequences: 237096
Number of extensions: 1762932
Number of successful extensions: 3607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3607
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)